PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42469.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 374aa    MW: 41151.4 Da    PI: 6.502
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42469.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.2e-29206264259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+++p+++++tY+g+H+h 
  KHN42469.1 206 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCAARKQVERSTSEPNTFIVTYTGDHKHA 264
                 799***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-29191266IPR003657WRKY domain
SuperFamilySSF1182904.84E-25199266IPR003657WRKY domain
PROSITE profilePS5081131.663200266IPR003657WRKY domain
SMARTSM007742.5E-33205265IPR003657WRKY domain
PfamPF031067.3E-24207263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTHEDWDLFA IVRSCKAATF TATTNTETPP TTTTTTTPNT TSCSGLSQEN GSFSFPNLVQ  60
PTTNGFQELQ HQQLLINFNP TNTITSTSTS TSTSGLGINP NSTFSEVAGF IGQQQIQQSL  120
HHHLVPAPTN HTFIGTPSTT GFDRFQQQQL QTPEQQQPQQ NQPPLQAPQT SHILSPTTQP  180
QTPRSRKRKS QQKKMVCHVT AQNLSSDLWA WRKYGQKPIK GSPYPRNYYR CSSCKGCAAR  240
KQVERSTSEP NTFIVTYTGD HKHAKPVHRN SLAGNTRTKL STTRLPETHE TVSCVIIENA  300
CSSNSELSPM SVRSDTLENE ATLVPGEPDC PDTDIDPEVP SEEDEDVLIP NTGAMSDSIF  360
LGLTNFDRDG VSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-16194266274WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-53AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180458.10.0probable WRKY transcription factor 27
TrEMBLA0A0B2SDU80.0A0A0B2SDU8_GLYSO; Putative WRKY transcription factor 27
STRINGGLYMA09G24080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-45WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]