PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN42251.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CPP

Protein Properties

Length: 902aa MW: 99048.9 Da PI: 5.4033

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN42251.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.2	2.2e-15	492	530	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkks+Clk+YC Cfaag++C++ C C++C N+ e KHN42251.1 492 CKHCNCKKSRCLKLYCHCFAAGTYCTDPCACQGCLNRPE 530 89**********************************876 PP
2	TCR	48.8	1.4e-15	577	615	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs+ C+Ce+CkN KHN42251.1 577 RHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNV 615 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-15	490	531	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.296	491	617	IPR005172	CRC domain
Pfam	PF03638	2.2E-11	493	528	IPR005172	CRC domain
SMART	SM01114	3.2E-17	577	618	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-11	579	614	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MMDSPGPSKN NNGSSSSAST LNNNNNDAAS SESPQVQESP FLRFVKTLSP IPTKASHTTQ 60 GCLRLSSPPL VFKSPRISHR ETQLTERPQG TRSLGGVILQ SVNEGNMLGE APGDSRTSNS 120 QQSLPERFIN DTQQVFDSKN DENTQYYSSP SCIDKYLVDP GDIDQMYSAG QDVEQQSTDP 180 AEASLSDQIH PKNNILNFDR QDGPGDKVEE SLPLSEGFNK FHQENAAYGE EPEEMEVENN 240 DVQWSSQEPA KLESILAADV FEKRYSHDTL PQFKLQLVEN YRWDHKNCTP QWMPDPLQGV 300 KGCEDYNEMV PTSHVTAENI LQDGSKATLK YHGIRRRCLQ FGEAASNALG SNVKLNATSN 360 KIIMVKPSEL VTSLCPQRGS GNFPLTGPKP TGIGLHINRI MNAIPTGQAA TMGVRLSDGS 420 QGMKSTSSIR LQRIENVKRS ILSSNVDGRS LVNTRTESHE IDDTGNSEDF NIPSSPCQKK 480 KKISETADDD GCKHCNCKKS RCLKLYCHCF AAGTYCTDPC ACQGCLNRPE YAETVVETKQ 540 LIESRDPSAF DPKIVLPTTD ISSHMDDENL TTPSSARHKR GCNCKRSMCL KKYCECYQAN 600 VGCSSGCRCE GCKNVYGKKE DYVAFEHTSS KERESSIVEE GSDYTFHKKL ERVASKTVYG 660 LHCLSPITPS LQCSEQGKEA AKSIIISGNY LPSPESDVNM FASCANYTKS SENLHSSQAL 720 LGTNEMLGST PYDSQIECSH AALLQLTPPL SNPELCGTSS FSSIANEWRN ISQSQPTHGC 780 ISQLPSGSLC WRSSPLTPSN RVGEAQYFQC SESDSRLFDI LENETPDVLK EASTPMTSVK 840 INSPTQKRVS PPQSRHFEIG SSSSGGLRSD RKFIFESVPS FPSLSPCVNS KSNGDDDEED 900 IS

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MMDSPGPSKN NNGSSSSAST LNNNNNDAAS SESPQVQESP FLRFVKTLSP IPTKASHTTQ  60
GCLRLSSPPL VFKSPRISHR ETQLTERPQG TRSLGGVILQ SVNEGNMLGE APGDSRTSNS  120
QQSLPERFIN DTQQVFDSKN DENTQYYSSP SCIDKYLVDP GDIDQMYSAG QDVEQQSTDP  180
AEASLSDQIH PKNNILNFDR QDGPGDKVEE SLPLSEGFNK FHQENAAYGE EPEEMEVENN  240
DVQWSSQEPA KLESILAADV FEKRYSHDTL PQFKLQLVEN YRWDHKNCTP QWMPDPLQGV  300
KGCEDYNEMV PTSHVTAENI LQDGSKATLK YHGIRRRCLQ FGEAASNALG SNVKLNATSN  360
KIIMVKPSEL VTSLCPQRGS GNFPLTGPKP TGIGLHINRI MNAIPTGQAA TMGVRLSDGS  420
QGMKSTSSIR LQRIENVKRS ILSSNVDGRS LVNTRTESHE IDDTGNSEDF NIPSSPCQKK  480
KKISETADDD GCKHCNCKKS RCLKLYCHCF AAGTYCTDPC ACQGCLNRPE YAETVVETKQ  540
LIESRDPSAF DPKIVLPTTD ISSHMDDENL TTPSSARHKR GCNCKRSMCL KKYCECYQAN  600
VGCSSGCRCE GCKNVYGKKE DYVAFEHTSS KERESSIVEE GSDYTFHKKL ERVASKTVYG  660
LHCLSPITPS LQCSEQGKEA AKSIIISGNY LPSPESDVNM FASCANYTKS SENLHSSQAL  720
LGTNEMLGST PYDSQIECSH AALLQLTPPL SNPELCGTSS FSSIANEWRN ISQSQPTHGC  780
ISQLPSGSLC WRSSPLTPSN RVGEAQYFQC SESDSRLFDI LENETPDVLK EASTPMTSVK  840
INSPTQKRVS PPQSRHFEIG SSSSGGLRSD RKFIFESVPS FPSLSPCVNS KSNGDDDEED  900
IS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-17	493	615	12	121	Protein lin-54 homolog
5fd3_B	2e-17	493	615	12	121	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN42251.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010165	0.0	AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025979626.1	0.0	uncharacterized protein LOC100800144 isoform X1
TrEMBL	A0A0B2S6F3	0.0	A0A0B2S6F3_GLYSO; Protein lin-54 like
STRING	GLYMA14G14750.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8565	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-55	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]