PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN42053.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 339aa    MW: 36176.1 Da    PI: 8.7961
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN42053.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.6e-3963122261
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k+s
  KHN42053.1  63 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSS 122
                 57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-3265121IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-2167112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.43267121IPR003851Zinc finger, Dof-type
PROSITE patternPS01361069105IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIQEMLGGAS ASHIPGERKI SINNGGGGRA LLLTPPTSSS SPSCTTSITT STATATATSS  60
NSENQNLRCP RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKSK  120
SSGGMSNSVA KQTATKMKAV ASELGRSPQG LFDQELPQTP ILWGSPQNSQ LMALLRATQN  180
QNPNPNPSPM SISVKGEGNL MGSHSHMVST ESLLANGLLN PRTSLGFDDG RVGEALPSLG  240
LCSSFWRNNQ DQTQQQNNGF VVGEHQSSGV QELYHKLRSS SSVNYWGSDN SPVFLSNMAS  300
SSSSLSNILE SSSVSGSEFG CWNPTLSWSD LPTTNGAYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN42053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958240.0BT095824.1 Soybean clone JCVI-FLGm-19N22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537372.10.0dof zinc finger protein DOF5.3
RefseqXP_028186832.10.0dof zinc finger protein DOF5.3-like
TrEMBLA0A445HXS00.0A0A445HXS0_GLYSO; Dof zinc finger protein DOF5.7
TrEMBLI1LHH90.0I1LHH9_SOYBN; Uncharacterized protein
STRINGGLYMA11G06300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-28DOF zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]