PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41295.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 381aa    MW: 41888.1 Da    PI: 9.5621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41295.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20153202255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+t+e Aa+a+++a+++++g
  KHN41295.1 153 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 202
                 8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-33152211IPR001471AP2/ERF domain
CDDcd000181.41E-21153212No hitNo description
SMARTSM003804.6E-38153216IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23153211IPR016177DNA-binding domain
PROSITE profilePS5103225.791153210IPR001471AP2/ERF domain
PfamPF008471.5E-14153202IPR001471AP2/ERF domain
PRINTSPR003673.6E-11154165IPR001471AP2/ERF domain
PRINTSPR003673.6E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQGGSLVSGY NRGDPELREI VSALTHVVSS GSGQRSTEWT QQSGFPMMSA SSLSRLSAFS  60
SSSPSPSSGA SWVGHKRGRE EEENSTSHNL MQQQQQSAPR LFRNIGDFMV PSQGDSSSVT  120
EEAPTSTTTT VTTVTTTVTE TPPPPGGGER RRKYRGVRQR PWGKWAAEIR DPHKAARVWL  180
GTFDTEEAAA RAYDEAALRF RGNRAKLNFP ENVRAVPPIQ PFQATTRLTV SDSTTSQFRP  240
LSAVAPPFIQ QPQIQGSSDL IRDYLQYSQL LQSDFQQQQI QQQQQQQRQQ QQQQQPSSLL  300
QQLYYNAQFA SLQSPSMLSS SPSFSSSVSP APFPLFTTSA SFPLFSSQQM GYFQPPESRN  360
PAGGVPEFPR SDTSSQPPPS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22152213163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERRRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310920.0KT031092.1 Glycine max clone HN_CCL_185 AP2-EREBP transcription factor (Glyma16g27950.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623949.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A0B2S7V80.0A0A0B2S7V8_GLYSO; Ethylene-responsive transcription factor ERF112
STRINGGLYMA16G27950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-29ethylene response factor 110
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]