PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41268.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 443aa    MW: 51385 Da    PI: 9.5094
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41268.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix751.2e-23118213185
    trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt+++v++Li + ++++e+  +++          ++k++W+++sk+m+erg+++sp+qC++k+++l+k ykk++ + +++ +++++++ +++d +
  KHN41268.1 118 KWTDKMVKLLIMVMSYIGEDATSDNsskrrkftvlQNKGKWKSISKVMAERGYHVSPQQCEDKFNDLSKSYKKLNVMLGRGtSCRVVENPSLLDLI 213
                 7**************99999887766678889999**********************************************568999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-21117240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGKLSKRGM LQGRGHFGGS DLPRSMRVRR KEKHPHSMNQ QHIHHCQRSL VHSSIHDGLP  60
LTMGSFQKCD HQILSMTEFN QRGIHKTSPS DASLVEEGVD GHHEAGKGKK STPWQQVKWT  120
DKMVKLLIMV MSYIGEDATS DNSSKRRKFT VLQNKGKWKS ISKVMAERGY HVSPQQCEDK  180
FNDLSKSYKK LNVMLGRGTS CRVVENPSLL DLIDYLSEKE KDHVRKILSS KHLFYEEMCS  240
YHNGNRLHLP HDPTLQQSLQ AALQNRDDHD SDDIRRSHHY DYDKDDIDME SSDQDDFEEN  300
YASLANSRGV YGATRQPLKR LKTGQGQVDV ATFGSALNSR EYNKISYSPV VQSDGNQDFL  360
PKMRATWLQK QSVESRSLQL EEQKLQIQDE MLELKKQRFK WQNFSRKKDL ELEKLKLENE  420
RMKIENERIA LKLKRQEISA NFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395407KQRFKWQNFSRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028207031.10.0uncharacterized protein LOC114390493
TrEMBLA0A0B2S9890.0A0A0B2S989_GLYSO; Uncharacterized protein
STRINGGLYMA16G28270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-135sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]