PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN41033.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 436aa    MW: 48802.9 Da    PI: 8.2236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN41033.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-1660104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
       KHN41033.1  60 RERWTDEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1754108IPR009057Homeodomain-like
PROSITE profilePS5129420.92455109IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1658107IPR006447Myb domain, plants
SMARTSM007174.7E-1359107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-960102IPR009057Homeodomain-like
PfamPF002491.3E-1360103IPR001005SANT/Myb domain
CDDcd001675.83E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAIQSQNAFT RSRGGLPIGD GISLNSGVHP VADIPLHDQF SCGNDYALKV RKPYTITKQR  60
ERWTDEEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKILR ESSRNSTTLE  120
ESIEIPPPRP KRKPIHPYPR KLVEIPKTEI SNSELPLRSN SLKPSDFGQE NNSPKSVLST  180
VVSETLGSSD SDTPTRCLSP TSSISDVPTN RFPLAEPKTS FEEEGSPPSS AHDKQPPVKL  240
EFFHKESVST KDDATEESSG RTLKLFGTTL LITDTCKPSS PTMEPWKPTP AAAMYLMQLQ  300
NGCSDITEGP ASIVPWWSLP HNTPFMPLHK EPKGNHIYSN LGEFVHKEVQ KEGSWTGSNT  360
SSINDGDNIE KSDDQAKSHV HCFSKSEISS ISELRVRPKT CGKGFVPCKR RMAERESKYS  420
SICYEEREEQ GIKLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN41033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311810.0KT031181.1 Glycine max clone HN_CCL_152 MYB/HD-like transcription factor (Glyma02g40800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519315.10.0protein REVEILLE 1
RefseqXP_028215738.10.0protein REVEILLE 1-like
TrEMBLA0A445LTC30.0A0A445LTC3_GLYSO; Protein REVEILLE 1
TrEMBLI1JHS30.0I1JHS3_SOYBN; MYB/HD-like transcription factor
STRINGGLYMA02G40800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-59MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]