PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40716.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 543aa    MW: 61245.1 Da    PI: 4.551
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40716.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1311.3e-401785423374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL +  ea+++g+++l + +L  +s+ asp g++++Rla+y+ +++ ++           l+ ++      ++  aal+++++ +Pi k++h++a +a
  KHN40716.1 178 HLLKAYGEALEQGQKALEEVILRCISQKASPLGESLERLAFYLSQGMTNHGDY--------LKGEA-----LKNFEAALRALYQGFPIGKIAHFAAVSA 263
                 78888999***************************************998765........33333.....5577789999****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl..elee 193
                 Ilea+ ++  vHi+Df i++G+QWp++++a+a  ++    l +T ++   ++     s  + eet+++L + A+++g++++ +    k +e+l  e+++
  KHN40716.1 264 ILEALPQDCDVHIVDFYIGHGVQWPPMIEAIAHMNKT---LTLTSIKWGGEVpecvsSPCNFEETRRQLYEHAKSCGLKLKVEE---KGVEELvsEIKK 356
                 ********************************87644...55555544333333445999*******************99887...555555223344 PP

        GRAS 194 Lrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.ee 281
                 ++ k   gE la n+++ l ++   +v ++++  ++L++  +l     ++ ++++ + +   +  n+ +F   f   l +y al++s+e+ +p+   e+
  KHN40716.1 357 MNKKGekGEFLAFNCMIDLPHMG--KVRSRKHVLQFLRVADEListsdNSGIITFGDGDafEKVkNNLNFRSFFDGHLVHYQALLESMESHFPTSFsEA 453
                 4333256***************8..77777778999999988866666788*******9532336999************************987569* PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                 ri +E+ +l++ i+++   ++ e  +r  +l       ee  ++  +ls+++ ++++ +lr  + s   r+e +++++lvl  k+ +L+ +S W+
  KHN40716.1 454 RIAMEKLFLQPCISSLDWLQTWEEMKRGGHL------EEETSLEGCQLSKNILMEIREVLRGSDgSYQARIEgQHDNELVLEYKGTQLLRFSTWK 542
                 **************99888888844444433......356778889*****************966667787888*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.625150520IPR005202Transcription factor GRAS
PfamPF035144.5E-38178542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MMQSEDLQFQ WPFFEDMNST FDQGVESYGF TTMYGHVGDC GPYDFTMNDH VGDCGFNTLL  60
STPEDSTSEI CSIPFPSSPI FSIDHIHIQY PINEETMHLP SLMELDDFDS ILDTQIISIQ  120
GHGESEGSFF PSQNLSSEVE NAWSPTPSVR SELSTNQTSP LTLPLENMEV ENQVSLPHLL  180
KAYGEALEQG QKALEEVILR CISQKASPLG ESLERLAFYL SQGMTNHGDY LKGEALKNFE  240
AALRALYQGF PIGKIAHFAA VSAILEALPQ DCDVHIVDFY IGHGVQWPPM IEAIAHMNKT  300
LTLTSIKWGG EVPECVSSPC NFEETRRQLY EHAKSCGLKL KVEEKGVEEL VSEIKKMNKK  360
GEKGEFLAFN CMIDLPHMGK VRSRKHVLQF LRVADELIST SDNSGIITFG DGDAFEKVKN  420
NLNFRSFFDG HLVHYQALLE SMESHFPTSF SEARIAMEKL FLQPCISSLD WLQTWEEMKR  480
GGHLEEETSL EGCQLSKNIL MEIREVLRGS DGSYQARIEG QHDNELVLEY KGTQLLRFST  540
WKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1418454214375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028213643.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A445FVW40.0A0A445FVW4_GLYSO; Nodulation-signaling pathway 2 protein
STRINGGLYMA18G43580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.17e-16GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]