PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN40398.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 270aa MW: 30348.2 Da PI: 9.2032

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN40398.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl KHN40398.1 21 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-32	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-23	119	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEGGGREGYN GVIMTMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQAQ KQNEEVHKEN SRCSYVNFSN RSLAPNTSYR GDDEGGEIPI 120 AEALRCQIEV QKRLEEQLKV QKKLQMRIEA QGKYLQSVLE KAQRSLSLDG PGSLEASRAE 180 LTEFNSALSN FMENMNKDSK QNIIEVNNFY SKSHGSAFYN QEVGREQNRD QKPKVEGGSI 240 QFDLNIKGSN DLVSAGGAEM DANMVSSYRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN40398.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-121	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516829.1	0.0	myb family transcription factor PHL11 isoform X1
Refseq	XP_028226914.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	2e-76	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	I1J4K9	0.0	I1J4K9_SOYBN; Uncharacterized protein
STRING	GLYMA01G01300.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	9e-78	G2-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]