PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40337.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HRT-like
Protein Properties Length: 758aa    MW: 85794.6 Da    PI: 7.5696
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40337.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.74.1e-18250280131
    HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                 iCGv+l+dGs+C+r+P+++R RC eHKGmR+
  KHN40337.1 250 ICGVALGDGSICTRPPAEKRMRCPEHKGMRT 280
                 8*****************************5 PP
2HRT-like34.24.3e-11317337121
    HRT-like   1 iCGviledGsvCkrqPvkgRK 21 
                 iCG++l+dGs+C+rqPvkgRK
  KHN40337.1 317 ICGILLSDGSTCTRQPVKGRK 337
                 8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.106410444IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.808445479IPR002885Pentatricopeptide repeat
PfamPF015358.2E-5450476IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-5450476IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.917480510IPR002885Pentatricopeptide repeat
PfamPF138120.0011499559IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.262511545IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831546581IPR002885Pentatricopeptide repeat
PfamPF144321.7E-34646748IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0008568Molecular Functionmicrotubule-severing ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MALGMSRFKR EQCNRTKHDS SFSHWKILIG PRDWEDHSKG KEGCSKYRIH NLPQQSGPGV  60
YELGIAAAAS VSERKIYKLV PHRHRIVVVY LGQTENVRER LRRYGGNGDH LEDSSLHLFQ  120
QVFSQGFSIL YRWAPMQNKE DALRTETELL STFDYAWNTR SNCVRRPDDI LQKLHQIASG  180
TRTLSDIARA LLPFTQKQVG IQIKSIKLDE ADNGSSYNNL LSRLFSFNRS RPRLVQDITG  240
AIQEQENGKI CGVALGDGSI CTRPPAEKRM RCPEHKGMRT NVSTAKAIIG APMSESHDLE  300
DPPQTVVDES LTNTDYICGI LLSDGSTCTR QPVKGRKSHK PDILLAIPAG TLAEQKAWSS  360
NSAHQWLPFH AQSSPIPLPS FLSVPTRFPT LAGGNLDQVL ELMGQGAVAD YRVYLALLNL  420
CEHTRSLESG KRVHEFLRRS TFRRDVELSN RLIRMYCKCG SVKDARRVFD QMLDRNMATW  480
HLMIGGYTSN GLGCDGLLVF QQMKQAGVPP DGETFELVLA ACAQAEAVEE GFLHFESMKE  540
YGIVPSMEHY LEVINIMGNA GQLKEAEEFI ENIPIEFGVE AWESLRKFAR IHGDLDLEDC  600
AEELLTRFDP SKAVADKLPT PPRKKQSDVN MLEEKNRATE YRYSIPYKEE DHEKLGGLSG  660
QMREAGYVPD TRYVLHDIDE EEKEKALQYH SERLAIAYGL ISTPPRTTLR IIKNLRICGD  720
CHNAIKIMSN IVGRELIVRD NKRFHHFKDG KCSCGDYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-2237957415316PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40337.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940110.0BT094011.1 Soybean clone JCVI-FLGm-18E5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240244.10.0pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like
TrEMBLA0A371G1100.0A0A371G110_MUCPR; Pentatricopeptide repeat-containing protein, mitochondrial (Fragment)
STRINGGLYMA07G15440.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.14e-75effector of transcription2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]