PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40143.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 209aa    MW: 24228.4 Da    PI: 7.4664
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40143.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.15.6e-33351312102
                   HHHHHHHHHC.....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile.....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                   Fl k+y++le      e+ ++++sw+++g+ fvv+ ++ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F++g +++
    KHN40143.1  35 FLLKTYDLLEelgenIEDSTKIVSWNAEGTGFVVWSPSEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKFQRGCRHM 122
                   99********6665545899**************************************************999.........*************** PP

                   XXXXXXXXX CS
  HSF_DNA-bind  94 lekikrkks 102
                   l +i rkk 
    KHN40143.1 123 LGEITRKKC 131
                   ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3427123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-4131129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2732129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-2935129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-97890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MANNYSVLEL NLGLGNNNVG GHAGQSPRQR CPAPFLLKTY DLLEELGENI EDSTKIVSWN  60
AEGTGFVVWS PSEFSELTLP RYFKHNNFSS FIRQLNTYGF KKISSKRWEF KHEKFQRGCR  120
HMLGEITRKK CEPSVFPAYL KSSSEENNAT SSTEENNDHQ LLMEENKNLK KERLELQVQI  180
DECKALEMKL LECLSQFMDT HQNKVRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-152112919129Heat shock factor protein 1
5d5v_B2e-152112919129Heat shock factor protein 1
5d5v_D2e-152112919129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516466.11e-155heat stress transcription factor B-2a
RefseqXP_028238608.11e-155heat stress transcription factor B-2a-like
TrEMBLA0A0B2S6111e-154A0A0B2S611_GLYSO; Heat stress transcription factor B-2a
TrEMBLI1J7X91e-154I1J7X9_SOYBN; Uncharacterized protein
STRINGGLYMA01G34490.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-35heat shock transcription factor B2A
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]