PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39987.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 329aa    MW: 37413.4 Da    PI: 6.5061
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39987.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.57.4e-25127187259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ++WrKYGqK + +sefprsY+rC+++   gC++ k+v+ ++e+p+++++tY g H+++
  KHN39987.1 127 DDNHAWRKYGQKRILNSEFPRSYFRCSHKydqGCRAIKQVQVDQENPNMLQTTYIGIHTCN 187
                 8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-24123187IPR003657WRKY domain
SuperFamilySSF1182901.83E-23123187IPR003657WRKY domain
SMARTSM007746.6E-34126188IPR003657WRKY domain
PfamPF031062.5E-23127186IPR003657WRKY domain
PROSITE profilePS5081118.441127189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MNNIICAESE SEISISAKNK RMIMKELVKG QESATQLKVL LEKPFGSEGS LSCQELTANV  60
LRSFTQAISI INSSSADEVA HRSLLNSGQN GSPVAVSGEN RSQKGRRGRY NRRKNALTWT  120
ILSCTTDDNH AWRKYGQKRI LNSEFPRSYF RCSHKYDQGC RAIKQVQVDQ ENPNMLQTTY  180
IGIHTCNGTP MATHSAIGSS STEWESSYLL NFDHHDSKVP NVQDHHISSP NLTIKQEFPK  240
EDTHSDVADH KYSDPNLWSD LKDFQPFKPT IMPFRMESDN NNNNNTNADN VYSSCTDYQR  300
LNMNFEMASV HFDTDFHFDE SHFDESPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18127186968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39987.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200099.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A445H8A80.0A0A445H8A8_GLYSO; Putative WRKY transcription factor 70 isoform A
STRINGGLYMA14G36430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-35WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]