PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38734.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TCP

Protein Properties

Length: 156aa MW: 17015.6 Da PI: 6.1083

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38734.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.3	6.9e-31	22	101	8	76
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceae 76 ++++hTkv+gR RRv l+ +caar+F+L+ eLG+++ ++tieWLl+qa+p+i+++tgt s+s++s ce+e KHN38734.1 22 KKDRHTKVNGRERRVLLPPLCAARVFQLTHELGYKTHGETIEWLLRQAEPSIIAATGTgilpssmvvsaSTSTPSLCEDE 101 79********************************************************5555555444322222333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-26	21	109	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.146	22	76	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000257	Molecular Function	nitrilase activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MASETPITLK AINTKLPSLK AKKDRHTKVN GRERRVLLPP LCAARVFQLT HELGYKTHGE 60 TIEWLLRQAE PSIIAATGTG ILPSSMVVSA STSTPSLCED ESTIGMHTNP MVVSTDNEIE 120 SKKEFLPLDL DSLANFDVEF SANEVAILQS LITKLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38734.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028186347.1	1e-111	transcription factor TCP20-like
TrEMBL	K7LQD2	1e-110	K7LQD2_SOYBN; Uncharacterized protein
STRING	GLYMA11G20201.1	1e-111	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-31	TCP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]