PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38261.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 362aa    MW: 42062.6 Da    PI: 8.0756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38261.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-066485223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +C+ Cg +F+ + +L +H+++H
  KHN38261.1 64 TCEECGATFKKHAYLLQHMQSH 85
                6*******************99 PP
2zf-C2H2188.1e-0691115123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC  s++rk++L+rH+  H
  KHN38261.1  91 FVCAvdDCQASYRRKDHLTRHLLQH 115
                 89*******************9887 PP
3zf-C2H214.50.0001120145123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kCp  +C+  Fs +sn+krH    H
  KHN38261.1 120 FKCPveNCNSEFSLQSNMKRHTEEiH 145
                 89*******************87766 PP
4zf-C2H219.72.2e-06161185123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + Cp   Cgk+F+  s+L++H  +H
  KHN38261.1 161 HMCPeiGCGKVFRYASQLQKHEDSH 185
                 68*******************9888 PP
5zf-C2H216.72e-05252277123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 ++C+   C+ +FsrksnL +H +  H
  KHN38261.1 252 FQCEfkGCSCTFSRKSNLDKHKKAvH 277
                 89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8081946IPR007087Zinc finger, C2H2
SMARTSM00355321941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3396390IPR007087Zinc finger, C2H2
SMARTSM003550.016385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-86490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-1071124No hitNo description
Gene3DG3DSA:3.30.160.602.7E-1091117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01891115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3991118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5118146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.12E-6118146No hitNo description
PROSITE profilePS5015710.201120150IPR007087Zinc finger, C2H2
SMARTSM003550.029120145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-7156185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.25E-5158187No hitNo description
PROSITE profilePS5015710.907161190IPR007087Zinc finger, C2H2
SMARTSM003550.0014161185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
SMARTSM003551.7193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SMARTSM0035530221242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-6233274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.91E-9234291No hitNo description
PROSITE profilePS5015712.819252282IPR007087Zinc finger, C2H2
SMARTSM003550.0042252277IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254277IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-5276306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.3283309IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280285309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MCEAVEIEER PKYKDIRRYY CEYCGICRSK KTLITSHINL HHKEEYEKAR AERDPEAEAS  60
KSNTCEECGA TFKKHAYLLQ HMQSHSLERP FVCAVDDCQA SYRRKDHLTR HLLQHEGKIF  120
KCPVENCNSE FSLQSNMKRH TEEIHDDSST TTSSDKSHKQ HMCPEIGCGK VFRYASQLQK  180
HEDSHVNLES VDMVCLEPGC LKHFTNVQCL QAHVKSSHQY MTCDICGTKQ LKKNIKRHLR  240
SHEAEGSSSE TFQCEFKGCS CTFSRKSNLD KHKKAVHLNV KPFACGFPDC GMRFAYKHVR  300
DNHEKTAKHV FTLGDFEEAD EEFRSRPRGG RKRTCPTVEV LIRKRVTPPS QLEHWLFMQD  360
SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-156722019162PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-156722019162PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220817.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-140TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A445LVR30.0A0A445LVR3_GLYSO; Transcription factor IIIA isoform A
STRINGGLYMA02G46270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-109transcription factor IIIA
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]