PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38016.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 418aa    MW: 46998.2 Da    PI: 7.9928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38016.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09233277554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + Er+RR+++ ++f  L   +P +     kK +Ka+iL +A+ ++k L
  KHN38016.1 233 HIMTERKRRRELTERFIALSATIPGL-----KKIDKATILSEAITHVKRL 277
                 899***********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.884228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15231303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7233277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-10233282No hitNo description
Gene3DG3DSA:4.10.280.102.2E-14233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MFNESLFSAI LISIYYQRYS FSIISLESNP QSQLPYTFFH SLPMGEPCQK YWFSDMEIQD  60
IDFFNQSHNH KIESLDHDED QIFREIMHQP VFSSDIDTHL PSKIQSKSIH GGVSSGYNTY  120
TVLANNKSNN SNLAMKSNTS NFIFSSQLHA PPEKLPATAS TSPTAYILSF DDSTVVAATR  180
QNYGEKQPYH QEVVLGSGGA CLPSKGVSEG HDFEPKAKPT TKRSRSSAET LVHIMTERKR  240
RRELTERFIA LSATIPGLKK IDKATILSEA ITHVKRLKER VRELEEQRKK TRVESVSFVH  300
QRSHIATVKG TTSGAMNSDE CCRTNEALPT VEARVFKKDV LLRIHCKIQS GILIKILDHL  360
NSLDLSTISN SVMPFGSSTL DISIIAQMGD NFNVTTMNDL VKNLRMTLSQ SSEVQVQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241RKRRR
2277289KERVRELEEQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-131AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247185.10.0transcription factor bHLH18-like
TrEMBLA0A445JI660.0A0A445JI66_GLYSO; Transcription factor bHLH19
STRINGGLYMA08G23062.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1625679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-27bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]