PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37443.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 503aa    MW: 55807.9 Da    PI: 4.9901
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37443.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-113924282157
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 k++yp++e++  LA++lgLte+q++ WF+ +R k+k+
  KHN37443.1 392 KHKYPTEEMKLVLAEELGLTEKQISGWFCHKRLKYKR 428
                 699*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.6E-5350433IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-11370433IPR009057Homeodomain-like
PROSITE profilePS5007112.357374429IPR001356Homeobox domain
SuperFamilySSF466892.18E-11391437IPR009057Homeodomain-like
CDDcd000869.04E-10392428No hitNo description
PfamPF000466.0E-9392428IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSQRGSPISE PIQPNIHVLG ARVSTKGSNA EAIVNPSPPN HVAPSKPTMG LYVHCQDSTE  60
LVALGKTYDG GSTIYNVAYA DDVVRVSVDK VINGDTEVPF LTSEIKYVRQ ALHTFVAWPT  120
TLVKLASNEH EGTSPSKVTD EAVESVNDVV VDDPLREFIK TLVDIYEKPV ELVWDVTKFG  180
IPNAAASFTP RWIKVKVLLR DPTDENVIHV VEELQRWLPR LSATSLQQKG DGKEYLGGQN  240
DVEAAEEDES PFEFRALEVA LEAICSFLAA RTIELEMAIS SRNLDRVRKL KSAMTRLTAR  300
VQRVRDELEQ LLDDDDDMVD LYLSRKVGSS SPVSGSGAAN WFAASPTIRS KISRASLATI  360
HLDENDVEEL EMLLEVYFSE IDHTLNKLTT IKHKYPTEEM KLVLAEELGL TEKQISGWFC  420
HKRLKYKRLM KDEVVANGRQ DCSSGVIQDR GSGLGQDSCG SSKHADHRYL DSKEVESHGL  480
YNLGQFATLD SLCGTKIDNN APH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971631e-147BT097163.1 Soybean clone JCVI-FLGm-21N11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2RYE10.0A0A0B2RYE1_GLYSO; Magnesium transporter MRS2-2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.12e-30HB-other family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]