PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37092.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 278aa    MW: 31576.1 Da    PI: 8.5862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37092.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.34.8e-26108166158
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                 ++Dgy+WrKYGqK+ k++  pr+Y+rC +a  Cp+kkkv+r+ +d+++++ +Y geH h
  KHN37092.1 108 VKDGYQWRKYGQKVTKDNASPRAYFRCYMApICPAKKKVQRCLHDKSILVAIYDGEHSH 166
                 58**************************999***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-26101167IPR003657WRKY domain
PROSITE profilePS5081122.045103166IPR003657WRKY domain
SuperFamilySSF1182906.67E-23104167IPR003657WRKY domain
SMARTSM007744.7E-28108168IPR003657WRKY domain
PfamPF031061.4E-21109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVVQLFNTEI IMDEKVETIK AELKRVREEN NTLRMMLEVL SSKYTKLETH LQEINKTQHK  60
GMSSNQIGSV TVPPMFQTNK RPRLEFPTAK KPLQIFVKTH PKDDSLIVKD GYQWRKYGQK  120
VTKDNASPRA YFRCYMAPIC PAKKKVQRCL HDKSILVAIY DGEHSHGPLD ESSSSTPKGS  180
SPVANNKLPL MTSVPNDKEA MNIDLALSGW SQTDRRHCED VMQQNNNNGG SNIKIEEYVS  240
SLIKDPDFTM SLAEAVARTI TGQQKQQDLN LNLELPEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161071661371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959380.0BT095938.1 Soybean clone JCVI-FLGm-20I19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237573.20.0WRKY transcription factor 63
RefseqXP_028210007.10.0probable WRKY transcription factor 40
TrEMBLA0A445GA470.0A0A445GA47_GLYSO; Putative WRKY transcription factor 40 isoform A
TrEMBLC6TEB70.0C6TEB7_SOYBN; Uncharacterized protein
STRINGGLYMA17G33920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-40WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]