PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN36585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 194aa MW: 22494.2 Da PI: 5.9044 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.8e-19 | 34 | 77 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e +v+++++lG++ W++Ia++++ gRt++++k++w++ KHN36585.1 34 RGNFSHEEEETIVRLHEKLGNR-WSAIAAELP-GRTDNEIKNHWHT 77 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-11 | 14 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.68E-22 | 15 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 15 | 28 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 25.943 | 29 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 33 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 34 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.42E-12 | 36 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 40 | 82 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MDLKGCPYST PRLARCGKSC RLRWLNYLRP DVKRGNFSHE EEETIVRLHE KLGNRWSAIA 60 AELPGRTDNE IKNHWHTALK KRFERKPKAK RRTEKEGNVV SKSMERVVLE NCSEYAVITT 120 DAAAAITNHE NSVLEGDDYG LSFLDTYTEP DVCANFWTEP YLIDNSYVPP EGDVVELWSH 180 NDLYMHEYCE GFFC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-20 | 14 | 83 | 36 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-20 | 14 | 83 | 36 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 80 | 87 | KRFERKPK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN36585.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541925.1 | 1e-133 | transcription factor MYB4 | ||||
Refseq | XP_028189328.1 | 1e-133 | transcription factor MYB4-like | ||||
TrEMBL | A0A445IC99 | 1e-133 | A0A445IC99_GLYSO; Transcription factor MYB14 | ||||
STRING | GLYMA13G37903.1 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-39 | myb domain protein 15 |
Publications ? help Back to Top | |||
---|---|---|---|
|