PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 225aa MW: 24977.6 Da PI: 10.1817 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.1e-32 | 154 | 211 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ KHN36253.1 154 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 211 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.6E-17 | 105 | 150 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-33 | 140 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.894 | 147 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 149 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 152 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-27 | 154 | 210 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAVEFMMGYR NDTFAEDNAV REAASGLESV EKLIKLLSHT QQQYQTTSKS SMENIDTDYT 60 AVADVAVSKF KKVISLLGRT RTGHARFRRA PVPVPVPPLS SSSLKRKCSS ENLGSAKCGS 120 SSSRCHCSKK RKMRQKRVVR VPAISLKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS 180 VRGCPARKHV ERALDDPSML VVTYEGEHNH TLSAAEATNL ILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-22 | 150 | 214 | 15 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-22 | 150 | 214 | 15 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36253.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM587699 | 1e-173 | KM587699.1 Glycine max clone GmWRKY35 WRKY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611676.1 | 1e-108 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 5e-67 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A1R3K4C8 | 1e-113 | A0A1R3K4C8_9ROSI; DNA-binding WRKY | ||||
STRING | AES94634 | 1e-108 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 1e-49 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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