PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36072.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 336aa    MW: 36736.6 Da    PI: 6.8875
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36072.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.26.1e-661242764153
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk..aaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                 g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrer qq +a++++    +s   + +kr+re  ++ +s l++t+ +s+  ++ l
  KHN36072.1 124 GGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQFSALQQTlePPSSGGGDLPKRHRERDHHYHSPLACTRFPSNPLSSGL 222
                 789**********************************************999888876511445558999*******99******************** PP

      DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                 e  ++P+ v+s+a frcvrvss+d+ +eee+aY tav+i+GhvfkGiLyd+G+e
  KHN36072.1 223 EEVNFPALVRSDAEFRCVRVSSMDEeAEEEYAYSTAVNIAGHVFKGILYDYGPE 276
                 ************************967889**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.1E-62125276IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.0E-27127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.2E-23227275IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGLFSLGGG SSSRGNTQQE EIPPPDTLFW YNNKNDDVSS YHRGGGDTLF WYNNKNDDVS  60
SYHRGGGIGL WNQHQLIGQG LSPQPRPLFR QDLYSALGVG PSKTISDDQS WSRSRFMLGS  120
VAGGGISCQD CGNQAKKDCP HMRCRTCCKS RGFDCQTHVK STWVPASRRR ERLQQFSALQ  180
QTLEPPSSGG GDLPKRHRER DHHYHSPLAC TRFPSNPLSS GLEEVNFPAL VRSDAEFRCV  240
RVSSMDEEAE EEYAYSTAVN IAGHVFKGIL YDYGPEGNTN YMAGAGESSS TGVGALNLTT  300
GAIVSEPIVD PSSLYTAPLN TFIPGSGTQF FPHPRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5716020.0FJ571602.1 Glycine max clone GM_WBa0048N22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516559.10.0protein SHI RELATED SEQUENCE 1 isoform X1
TrEMBLK7K4B80.0K7K4B8_SOYBN; Uncharacterized protein
STRINGGLYMA01G37590.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-65Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]