PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35518.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 278aa    MW: 31434.9 Da    PI: 8.7157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35518.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28108167159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+ k++  pr+Y+rC++a  Cpvkkkv+r+ +d+++v+ tY geHnh 
  KHN35518.1 108 VKDGYQWRKYGQKVTKDNASPRAYFRCSMApMCPVKKKVQRCLHDKSIVVATYDGEHNHA 167
                 58***************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-28101167IPR003657WRKY domain
PROSITE profilePS5081124.386103169IPR003657WRKY domain
SuperFamilySSF1182903.14E-24104167IPR003657WRKY domain
SMARTSM007742.7E-32108168IPR003657WRKY domain
PfamPF031066.9E-23109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVVQLFNTAI IMDEKVETLK AELQRVREEN NTLRLMLEVL NSKCTKLEIH LQEINKAQHK  60
GMSSNQIGSV TVPPMFDTNK RPRLELPTAK KPLQIFVRTH PKDDSLIVKD GYQWRKYGQK  120
VTKDNASPRA YFRCSMAPMC PVKKKVQRCL HDKSIVVATY DGEHNHAAIH ESSSSTSKGS  180
SPVVNNLPLM TSILNDKEPM NIGLALSGWS QTDHRRHCED AMQQNNNNGG SNIRIEEYVS  240
SLIKNPDFSM SLAEAVVRTI TGQQKQQDIN LNLDLPEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-191071661371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753490.0EU375349.1 Glycine max transcription factor (WRKY63) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544566.10.0probable WRKY transcription factor 40
RefseqXP_014622429.10.0probable WRKY transcription factor 40
RefseqXP_028200604.10.0probable WRKY transcription factor 40
RefseqXP_028200605.10.0probable WRKY transcription factor 40
TrEMBLA0A0B2RT220.0A0A0B2RT22_GLYSO; Putative WRKY transcription factor 40
TrEMBLI1M9950.0I1M995_SOYBN; Uncharacterized protein
STRINGGLYMA14G11920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-38WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]