PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35225.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 211aa    MW: 23883.1 Da    PI: 6.3606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35225.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-111865655
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  +E++RR+++++ +++L +llP+ +   p++ l   + + +A++YIksL+
  KHN35225.1 18 RLVEKNRRNQMKNLYNKLNSLLPSyN---PKEALPLPDQVDEAINYIKSLE 65
                679*********************66...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-61069No hitNo description
SuperFamilySSF474593.01E-121079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8841264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-111580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-41870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-71865IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDQLGIIQPS SSTKVERRLV EKNRRNQMKN LYNKLNSLLP SYNPKEALPL PDQVDEAINY  60
IKSLEAKVKM AQEKKENLQG IRKRSRGCFS NNSANFAATS GFPKSPQLEI HEVGSSLQVV  120
LTCGLDHQFI FYEIIQILHE ENIEVRSVNS SLAGDSVLHV VHAEIPQSFL QFGATKVSER  180
LKRFVNGSCS DVETQPELWD FEIGTDDMWG F
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540915.11e-157transcription factor bHLH162
RefseqXP_028192200.11e-157transcription factor bHLH162-like
TrEMBLA0A0B2RQ841e-155A0A0B2RQ84_GLYSO; Transcription factor bHLH162 isoform A
TrEMBLI1LS391e-155I1LS39_SOYBN; Uncharacterized protein
STRINGGLYMA12G12880.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-35bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]