PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 26902.4 Da PI: 9.5625 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.7e-07 | 92 | 111 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ KHN34754.1 92 FSCPVCHKTFNRYNNLQMHM 111 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.0006 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ KHN34754.1 176 FTCRKCGKPLAVKGDWRTHEKNC 198 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.48E-6 | 87 | 114 | No hit | No description |
SMART | SM00355 | 0.044 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 92 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.16E-5 | 161 | 196 | No hit | No description |
SMART | SM00355 | 160 | 176 | 196 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNQNQLQPLP LLSSFLGSSH EESLLQNQNE NPNNACHGQV EDVTVALHIG LPDHSSGSNS 60 TNNHGFVNAT TQVPNNYWIP TQEQILIGFS HFSCPVCHKT FNRYNNLQMH MWGHGSQYRR 120 GPDSLKRTHP RPLLDLPCYC CARGCKNNIE HARAKPLKDF RTLQTHYKRK HGSKPFTCRK 180 CGKPLAVKGD WRTHEKNCGK RWLCICGSDF KHKRSLKDHI KAFGFGHTPF SSSSDGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | DSLKRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34754.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311808 | 0.0 | AJ311808.1 Glycine max partial mRNA for WIP1 protein (WIP1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542356.2 | 1e-179 | protein TRANSPARENT TESTA 1 | ||||
Refseq | XP_028197103.1 | 1e-179 | protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q8VWG3 | 1e-96 | TT1_ARATH; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | A0A0B2RR97 | 1e-178 | A0A0B2RR97_GLYSO; Protein TRANSPARENT TESTA 1 | ||||
TrEMBL | I1LVX8 | 1e-178 | I1LVX8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G01720.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34790.1 | 7e-96 | C2H2 family protein |
Publications ? help Back to Top | |||
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