PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 27950.3 Da PI: 6.7941 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.6 | 2.8e-15 | 27 | 87 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ + l + +++V++WFqNrR + ++ KHN34632.1 27 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRRLLekfgAVGDANVFYWFQNRRSRSRR 87 89*****************99*****************99******************997 PP | |||||||
2 | Wus_type_Homeobox | 105.3 | 4e-34 | 26 | 88 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r+ KHN34632.1 26 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRRLLEKFGAVGDANVFYWFQNRRSRSRRA 88 589**********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-13 | 22 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-8 | 23 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.224 | 23 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-5 | 25 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-13 | 27 | 87 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEDQGQQQQQ QEAKSPRQGT ERSEAVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR 60 RLLEKFGAVG DANVFYWFQN RRSRSRRAQA QTLVGGAIPL DHTTQGNLVV ASSATSTMGF 120 GCSSSPSYAF LGSSSSSCGG GVIGGHQQGM EGFFSVSSQM GFPDHHTSPA SSAFYPPLDP 180 NLTYQAGYGG TNISGFITVF LNGIATELPK GPIDLKTVFG EDVMLVHSSG VPIPTNEFGF 240 LMQNLRHGES YFLVGVYI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34632.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 5e-69 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028217826.1 | 1e-158 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 2e-69 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A445FF92 | 1e-156 | A0A445FF92_GLYSO; WUSCHEL-related homeobox 11 | ||||
STRING | GLYMA19G29660.2 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-62 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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