PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34632.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 258aa    MW: 27950.3 Da    PI: 6.7941
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34632.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.8e-152787257
                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                r+R+t+++eq+ +Le+ F++   +p ++e  ++ + l     + +++V++WFqNrR + ++
  KHN34632.1 27 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRRLLekfgAVGDANVFYWFQNRRSRSRR 87
                89*****************99*****************99******************997 PP

2Wus_type_Homeobox105.34e-342688264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r+ 
         KHN34632.1 26 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRRLLEKFGAVGDANVFYWFQNRRSRSRRA 88
                       589**********************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-132291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-82391IPR009057Homeodomain-like
PROSITE profilePS5007111.2242388IPR001356Homeobox domain
SMARTSM003893.2E-52592IPR001356Homeobox domain
PfamPF000464.8E-132787IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEDQGQQQQQ QEAKSPRQGT ERSEAVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR  60
RLLEKFGAVG DANVFYWFQN RRSRSRRAQA QTLVGGAIPL DHTTQGNLVV ASSATSTMGF  120
GCSSSPSYAF LGSSSSSCGG GVIGGHQQGM EGFFSVSSQM GFPDHHTSPA SSAFYPPLDP  180
NLTYQAGYGG TNISGFITVF LNGIATELPK GPIDLKTVFG EDVMLVHSSG VPIPTNEFGF  240
LMQNLRHGES YFLVGVYI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-69AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217826.11e-158WUSCHEL-related homeobox 11-like
SwissprotQ6X7J32e-69WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A445FF921e-156A0A445FF92_GLYSO; WUSCHEL-related homeobox 11
STRINGGLYMA19G29660.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-62WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  3. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  4. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  5. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]