PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN33871.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 299aa MW: 32510.8 Da PI: 7.7198

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33871.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.7	1.9e-82	1	295	87	373
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...........skeeleetgerLakfAeelgv 174 +sP++kf+h+taNqaIleav++e+rvHiiD+di++G+QW++L+qaL+s + p+lRiT++++ g s+ +++etg+rL+ fA+++g KHN33871.1 1 MSPYIKFAHFTANQAILEAVAHEKRVHIIDYDITEGAQWASLIQALSSAGPPGPHLRITALSRGGGGggnsssasgqrSTASVQETGRRLTAFAASVGQ 99 79********************************************999999***99554477788899999999************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl 271 pf+f+ + e++++++L++ +gEal+ n++l+l +l + ++L+ k+l++++vv+ve+e+ + ++ F+ f+++l++ysa+fdsl KHN33871.1 100 PFSFHHSRLDPDETFRPSNLKLVRGEALVFNCMLHLPHLN---FRASGSVGSFLRGAKELNSRLVVLVEEEMGCvaADSGFVGFFMDSLYHYSAVFDSL 195 *9888899********************9996...333334557***************99877899**************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvs 369 e+++p ++ +r+ vE+++lg++i+ va + +e++ +W e+l++aGF+ vpls + +qa+lll ++ dgyrvee ++ lvlgWk+r+L+s KHN33871.1 196 EVGFPMQTWARALVEKVFLGPRITGSVARMYGS--GTEEEKVSWGEWLGAAGFRGVPLSFANHCQANLLLGLFN-DGYRVEELeNNRLVLGWKSRRLLS 291 *************************9998..5667779****************************.**86488999****** PP GRAS 370 vSaW 373 +S+W KHN33871.1 292 ASVW 295 ** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.19	1	276	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-80	1	295	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MSPYIKFAHF TANQAILEAV AHEKRVHIID YDITEGAQWA SLIQALSSAG PPGPHLRITA 60 LSRGGGGGGN SSSASGQRST ASVQETGRRL TAFAASVGQP FSFHHSRLDP DETFRPSNLK 120 LVRGEALVFN CMLHLPHLNF RASGSVGSFL RGAKELNSRL VVLVEEEMGC VAADSGFVGF 180 FMDSLYHYSA VFDSLEVGFP MQTWARALVE KVFLGPRITG SVARMYGSGT EEEKVSWGEW 240 LGAAGFRGVP LSFANHCQAN LLLGLFNDGY RVEELENNRL VLGWKSRRLL SASVWSSNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-42	1	299	104	381	Protein SCARECROW
5b3h_D	6e-42	1	299	104	381	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN33871.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543792.1	0.0	nodulation-signaling pathway 2 protein
Swissprot	Q5NE24	1e-152	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	I1LW54	0.0	I1LW54_SOYBN; Uncharacterized protein
STRING	GLYMA13G02840.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6264	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-104	GRAS family protein

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]