PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN33564.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7417.7 Da PI: 10.8154

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33564.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3.1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskR+ g++KKA ELS LCd e+a+i+fs+ gkl++y+s KHN33564.1 9 KKIDNVTARQVTFSKRKSGLFKKARELSLLCDSEIALIVFSPGGKLFDYAS 59 68***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.609	1	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.30E-33	3	61	No hit	No description
SuperFamily	SSF55455	1.44E-26	3	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MVRRKIPIKK IDNVTARQVT FSKRKSGLFK KARELSLLCD SEIALIVFSP GGKLFDYASS 60 SENVTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_B	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_C	2e-18	1	60	1	60	MEF2 CHIMERA
6byy_D	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_A	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_B	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_C	2e-18	1	60	1	60	MEF2 CHIMERA
6bz1_D	2e-18	1	60	1	60	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN33564.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	4e-54	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028203158.1	6e-36	MADS-box protein JOINTLESS-like
Refseq	XP_028203159.1	6e-36	MADS-box protein JOINTLESS-like
Swissprot	Q9FUY6	8e-26	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A445GPV2	1e-34	A0A445GPV2_GLYSO; MADS-box protein JOINTLESS isoform A
STRING	GLYMA15G06314.1	2e-35	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-27	MIKC_MADS family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]