PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33563.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23357.6 Da    PI: 9.4414
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33563.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.4e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n   rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs tgkl+ey+s
  KHN33563.1  9 KKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEYAS 59
                689**********************************************86 PP
2K-box31.57.4e-12961712398
       K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  L+keie   +e+ +l  e+L+ L++keLq+Le+ L++  ++i ++K+e ++++i++l+ ke +l een++L++ +
  KHN33563.1  96 PLRKEIEDKTNELSQLNEEELQGLKIKELQKLEDILQRRWTTISKTKDEKVIQEINHLKTKEAKLMEENQKLKQSF 171
                 58999999999*************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.058161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-26323IPR002100Transcription factor, MADS-box
CDDcd002652.25E-37374No hitNo description
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.08687178IPR002487Transcription factor, K-box
PfamPF014866.6E-1197170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTRKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFSA TGKLFEYASS  60
SMQQTLERRN QHSGIQGLDN SSIGQQLGSD SFGMLPLRKE IEDKTNELSQ LNEEELQGLK  120
IKELQKLEDI LQRRWTTISK TKDEKVIQEI NHLKTKEAKL MEENQKLKQS FLQEQRQSYE  180
SFTCSSSEFP PDNGSSDTSL KLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-20173173MEF2C
5f28_B6e-20173173MEF2C
5f28_C6e-20173173MEF2C
5f28_D6e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33563.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-66AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203668.11e-146MADS-box protein JOINTLESS-like
SwissprotQ9FUY68e-59JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A445GPM91e-145A0A445GPM9_GLYSO; MADS-box protein JOINTLESS isoform A
STRINGGLYMA15G06302.21e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]