PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32858.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 345aa    MW: 39106.3 Da    PI: 8.9262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32858.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.5e-49181441128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++
  KHN32858.1  18 MFPGFRFCPTDEELISYYLRKKMDGHQESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPKGSQSKRATECGYWKATGKERNVKS-GSN 114
                 579************************988.99***************667777899**************************************.99* PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 ++g+k+tLvf+ grapkge+t+W+mhey +
  KHN32858.1 115 VIGTKRTLVFHLGRAPKGERTEWIMHEYCI 144
                 ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5510159IPR003441NAC domain
PROSITE profilePS5100553.42718160IPR003441NAC domain
PfamPF023653.6E-2620143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMEGVSREAQ MSIAASSMFP GFRFCPTDEE LISYYLRKKM DGHQESVQVI SEVELCKYEP  60
WDLPAKSFIQ SDNEWFFFSP RGRKYPKGSQ SKRATECGYW KATGKERNVK SGSNVIGTKR  120
TLVFHLGRAP KGERTEWIMH EYCINEKSQD SLVICRLKKN TEFRLGDSSN RASSSQRHPV  180
GCSSKRDSCS YGSPSMEQID SVSEPNQRPV SEATLAVSSG QPKERYEEDC YAEILKDDII  240
KLDESSISVE GHTRPQDPIQ MHPSPQGTSQ RRIRLRVGNS KHSPAVVRFP CTMHSSKSTF  300
FARITISLVV FPFFVFTLTV LYFLSLVGGN KQVKYCGKFS GVNYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-451715916164NO APICAL MERISTEM PROTEIN
1ut4_B6e-451715916164NO APICAL MERISTEM PROTEIN
1ut7_A6e-451715916164NO APICAL MERISTEM PROTEIN
1ut7_B6e-451715916164NO APICAL MERISTEM PROTEIN
3swm_A5e-451715919167NAC domain-containing protein 19
3swm_B5e-451715919167NAC domain-containing protein 19
3swm_C5e-451715919167NAC domain-containing protein 19
3swm_D5e-451715919167NAC domain-containing protein 19
3swp_A5e-451715919167NAC domain-containing protein 19
3swp_B5e-451715919167NAC domain-containing protein 19
3swp_C5e-451715919167NAC domain-containing protein 19
3swp_D5e-451715919167NAC domain-containing protein 19
4dul_A6e-451715916164NAC domain-containing protein 19
4dul_B6e-451715916164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32858.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-102AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186647.10.0NAC domain-containing protein 40-like
SwissprotQ9XIN71e-96NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0B2RLI40.0A0A0B2RLI4_GLYSO; NAC domain-containing protein 89
STRINGGLYMA12G31211.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.16e-99NTM1-like 8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]