PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN32118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 327aa MW: 36678 Da PI: 6.8357 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.5e-21 | 104 | 163 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+l+++ ++psaee+++++++l +++ ++V++WFqN++a++++ KHN32118.1 104 SRWNPTKEQISMLENLYKQgIKTPSAEEIQQITARLraygHIEGKNVFYWFQNHKARQRQ 163 8*****************99**************************************96 PP | |||||||
2 | Wus_type_Homeobox | 115.3 | 3e-37 | 102 | 165 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi +Le+lyk+G++tP++eeiq+ita+L++yG+ie+kNVfyWFQN+kaR+rqkq KHN32118.1 102 SSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQ 165 579***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.175 | 99 | 164 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-7 | 101 | 168 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-13 | 101 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-18 | 104 | 163 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-9 | 104 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.92E-8 | 105 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MFSEMFCTKN NTHVNPLYQL STILFLPTYL LLYKKSECFT SHGNNSKSIV VITSNNKIKY 60 SSGIGIDNRI VMESGNNNDE ELDMEMEMGG SNVNGNGGVA GSSSRWNPTK EQISMLENLY 120 KQGIKTPSAE EIQQITARLR AYGHIEGKNV FYWFQNHKAR QRQKQKQETF AYFNRFLHTP 180 QPFFSPPICP NAMCAPYYIP QAQGEIGFYH PHPKVLVPVG FRRSPSEKVV PTGMHQMQQR 240 ISDCCNSHYS NQETLDLFPL HPTGILEGKT TTTTDQVPSL ASVSADSSTD TPSAAASPDH 300 INEDHDHASP LNQPFFDFFT TSGQGSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN32118.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235295 | 1e-139 | AC235295.1 Glycine max strain Williams 82 clone GM_WBb0059N17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540730.2 | 0.0 | WUSCHEL-related homeobox 2 | ||||
Refseq | XP_028194120.1 | 0.0 | WUSCHEL-related homeobox 2-like | ||||
Swissprot | Q6X7K1 | 9e-54 | WOX2_ARATH; WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A0B2RJI5 | 0.0 | A0A0B2RJI5_GLYSO; WUSCHEL-related homeobox 2 | ||||
TrEMBL | K7LTC5 | 0.0 | K7LTC5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G06895.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-51 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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