PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN31844.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HSF

Protein Properties

Length: 129aa MW: 14549.9 Da PI: 6.0623

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN31844.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	62.5	1.1e-19	67	126	1	60
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 aFl+k+++ ++d++l+ ++sw +g s++v+d++ fa++vLp Fkh+nf+SFvRQLn+Y KHN31844.1 67 AFLSKTFDPVDDPSLDPIMSWCYSGVSYMVWDPTLFARHVLPMNFKHNNFSSFVRQLNTY 126 69*********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-20	63	126	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-10	64	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-17	66	126	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.4E-12	68	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-15	68	126	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-12	106	118	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.4E-12	119	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MVSGSYILVL KETKFEYSEP VLYLDVGIWH PLAPISSPSC PLPVARNTIS ICLSHPLECL 60 QGNPVPAFLS KTFDPVDDPS LDPIMSWCYS GVSYMVWDPT LFARHVLPMN FKHNNFSSFV 120 RQLNTYVVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	1e-15	62	126	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	1e-15	62	126	1	65	HEAT-SHOCK TRANSCRIPTION FACTOR
2ldu_A	1e-15	65	126	17	78	Heat shock factor protein 1
5d5u_B	1e-15	65	126	26	87	Heat shock factor protein 1
5d5v_B	1e-15	65	126	26	87	Heat shock factor protein 1
5d5v_D	1e-15	65	126	26	87	Heat shock factor protein 1
5hdg_A	1e-15	65	126	7	68	Heat shock factor protein 1
5hdn_A	1e-15	65	126	7	68	Heat shock factor protein 1
5hdn_B	1e-15	65	126	7	68	Heat shock factor protein 1
5hdn_C	1e-15	65	126	7	68	Heat shock factor protein 1
5hdn_D	1e-15	65	126	7	68	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269\|PubMed:17999647, ECO:0000269\|PubMed:18261981}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN31844.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:17999647, ECO:0000269\|PubMed:18261981}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096133	3e-87	BT096133.1 Soybean clone JCVI-FLGm-15K24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027938506.1	5e-40	heat stress transcription factor A-3-like
Swissprot	Q8GYY1	6e-33	HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBL	A0A0B2RHQ6	1e-89	A0A0B2RHQ6_GLYSO; Heat stress transcription factor A-3
STRING	GLYMA03G34900.1	6e-39	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1592	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	2e-35	heat shock transcription factor A3

Publications ? help Back to Top
Jung HS, et al. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9 [PMID:23918368] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Nie S,Yue H,Xing D A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance. Plant Physiol., 2016. [PMID:26099269] Hu Z, et al. Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis. Plant J., 2015. 84(6): p. 1178-91 [PMID:26576681] Song C,Chung WS,Lim CO Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis. Mol. Cells, 2016. 39(6): p. 477-83 [PMID:27109422] Kim GD,Cho YH,Lee BH,Yoo SD STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance. Plant Physiol., 2017. 173(4): p. 2370-2382 [PMID:28223317] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]