PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 533aa MW: 62663.4 Da PI: 6.5152 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.5 | 4e-22 | 131 | 222 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 fY++YA++ GFsvrk + k+ ng + +r+f C +eg+++ + + ke+r+r++tr++Cka l+++++k ++w+vtk++ eHnH l KHN31358.1 131 FYKRYAYQHGFSVRKGRFIKR--NGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKshdifPSEWRVTKFVVEHNHVLL 222 9***************87776..9*9******************999*********************99865555579************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-19 | 131 | 222 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MINNTMGEGN TSTRDMSTIN NTMGEGSTST RDMSTDKINV DLNEYPIEDI SLENGYSGTV 60 SEHFDHDIVA NDVLEVEEIE TYEKENIVSS SQNIEINEFA EEVDRDETYN ETNIVPFVGQ 120 IFLSEEEAFA FYKRYAYQHG FSVRKGRFIK RNGIMRRRDF FCHREGRSSL KIIEPLKEQR 180 NRESTRCECK AYLRISLQKS HDIFPSEWRV TKFVVEHNHV LLTQSEVRFL PANRTISEDD 240 IERIFLLKEG GLSVRQLMRV IELEKNVKHG YLPFIERDIR NLFVKTKKKV ERNDAKDLLK 300 YCEDAKKSCS KFQYAYTLDE ERRNYWALAY LRDHFFGGMT TTGRSESINA FIKRFINSHT 360 SLSDFTKQVD VAIDDIKQKE DHDIMLEKCK RINLKLMSPL QEQAHGVLTR FAFQKFQEEF 420 ERSTQYSIHH ENGNEFVLRY YKDANSRKHM VFWDDCHEIP SNYLPSRWRL QTSHDDDEVD 480 PQQVNVVFEE QVDVVHCPPP SKTKGRPKRR RLKGGKELSH NMNTCGLCKD HVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 507 | 511 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31358.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF533695 | 0.0 | EF533695.1 Glycine max clone BAC GM_WBb098N15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014622071.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like isoform X4 | ||||
TrEMBL | A0A445L2F4 | 0.0 | A0A445L2F4_GLYSO; Protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | AES62383 | 1e-127 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 7e-55 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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