PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30635.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 435aa    MW: 50009.7 Da    PI: 7.1306
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30635.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.15.1e-641134273321
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.sseelaalkl....fsevsPilkfsh 95 
                 + Ll++Ae v  +++e+ + lL+  + ++s  + ++qR++++f++AL++r+ r  +++ k   + +e++e++ ++e+l +++      ++  P+ ++ +
  KHN30635.1 113 QFLLAAAERVGCQQFERSSMLLSYFQWNSS-GDGAVQRVVFHFAQALQERIRR--ETIGKLTlNKREKNEEKdTIEKLRSDTNiavaCHQKIPFNQMMQ 208
                 67999*******999999988888776655.5569******************..4444433244444443346666665544566689999******* PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                 +   qaI+e ve++++ H i +di+ G+Q +aL+qaLa+R+ e+   l+iT++g    + k+e e+tg+rL +fAe+l++pf ++v+ ++++ ++++e+
  KHN30635.1 209 FSGVQAIVENVESKTKTHLINLDIGCGVQCMALMQALAERQeEQVEILKITAIGL---QGKTEPEKTGKRLVSFAESLNLPFLYKVVFVTSIIEIKVEQ 304
                 *****************************************556679********...5899************************************* PP

        GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                 + ++ +Ea+aV + ++l +++++s sle+    ++++++++++ ++++ e ea+hns++F++rf+eal +ysa+ d++e+ + ++ e r+ +E   l++
  KHN30635.1 305 FGIEDNEAVAVYSPYMLRTMVSDSDSLEH----LIRVMRKIRSSIMIILELEAKHNSPTFVNRFIEALFFYSAFSDCIETCMKQDYECRMRIEGI-LSE 398
                 *********************99999998....************************************************************99.*** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerlee 321
                  i+n+va+e  er  r+ +   Wr+ + +
  KHN30635.1 399 GIRNIVAMEDGERMVRNVKIDVWRRFFAR 427
                 ************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.18985435IPR005202Transcription factor GRAS
PfamPF035141.8E-61113427IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MELLGGINTF PTSSEKNQKQ QHDFNFDPLM LEEFNFVLVH QPKQSLQEIK EPKKNEQVLP  60
SSIASLELLS NYGSRFKRLG KQNIIDSNVQ TCVSTPQKLS TEEIIRLAVA RTQFLLAAAE  120
RVGCQQFERS SMLLSYFQWN SSGDGAVQRV VFHFAQALQE RIRRETIGKL TLNKREKNEE  180
KDTIEKLRSD TNIAVACHQK IPFNQMMQFS GVQAIVENVE SKTKTHLINL DIGCGVQCMA  240
LMQALAERQE EQVEILKITA IGLQGKTEPE KTGKRLVSFA ESLNLPFLYK VVFVTSIIEI  300
KVEQFGIEDN EAVAVYSPYM LRTMVSDSDS LEHLIRVMRK IRSSIMIILE LEAKHNSPTF  360
VNRFIEALFF YSAFSDCIET CMKQDYECRM RIEGILSEGI RNIVAMEDGE RMVRNVKIDV  420
WRRFFARYRM VETNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2514241336309GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30635.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413104.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0B2RAQ60.0A0A0B2RAQ6_GLYSO; DELLA protein RGL1
STRINGGLYMA10G01571.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-34RGA-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]