PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30231.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 476aa    MW: 52628.7 Da    PI: 7.6341
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30231.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17136185155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KHN30231.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                 78*******************......55************************998 PP
2AP241.24.1e-13228278155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  KHN30231.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 278
                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16136193IPR016177DNA-binding domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
CDDcd000182.18E-11137192No hitNo description
SMARTSM003801.8E-31137199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-17137193IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-17228287IPR016177DNA-binding domain
CDDcd000184.46E-26228288No hitNo description
PfamPF008471.2E-8228278IPR001471AP2/ERF domain
PROSITE profilePS5103215.527229286IPR001471AP2/ERF domain
SMARTSM003801.0E-32229292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15229286IPR001471AP2/ERF domain
PRINTSPR003675.0E-6230241IPR001471AP2/ERF domain
PRINTSPR003675.0E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLDLNLTAES TQNDELLVLL DKFPEASSGT SNSSIVNAEG SSNEDSCSTR AGDVFTFNFG  60
ILKVEAANDV VAAATKELFP VSSENWQGQS STSLIQARKS LMDLSLDQQN GEVKVVQVQP  120
QPKVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS SGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE AVTNFEPSTY ESEMKPEAIN  300
EGGSHDLDLS LGIATPGHGP KENRGHLQFQ SIPYNMHPGR SSMMETNINS VIGDPSLKRL  360
VVTEERPSVW NAAYSTFFPN LERAERMGTD PSKGVPNPNW AWQTHGQVTD TPVPPFSTAA  420
SSGFSISATF PSTAIFPTKS INSVPHSLCF TSPSTPGSNA PQFYNYYEVK SPQPPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30231.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028190357.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
RefseqXP_028190358.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AXC31e-109AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A445IDH50.0A0A445IDH5_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform A
STRINGGLYMA13G40470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-103related to AP2.7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]