PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29552.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 543aa    MW: 60524.9 Da    PI: 7.9109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29552.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32204261260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +Dg+nWrKYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+H h+k
  KHN29552.1 204 EDGFNWRKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSL-DGHITEIVYKGQHSHPK 261
                 7****************************************.***************85 PP
2WRKY101.74.4e-32372430159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  KHN29552.1 372 LDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 430
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-28193262IPR003657WRKY domain
PROSITE profilePS5081122.538198262IPR003657WRKY domain
SuperFamilySSF1182901.02E-24199262IPR003657WRKY domain
SMARTSM007744.4E-35203261IPR003657WRKY domain
PfamPF031061.8E-24204260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-35357432IPR003657WRKY domain
SuperFamilySSF1182901.7E-27365432IPR003657WRKY domain
PROSITE profilePS5081136.483367432IPR003657WRKY domain
SMARTSM007741.7E-36372431IPR003657WRKY domain
PfamPF031063.3E-24373430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MTMGDHNNWG TSELSLNNQY QNHNQVGLDV PKFKSVQPPS LLFSPSSISP SSYFNFSSAF  60
SPSEFLNSPL FFPSPNIFAS PTTEALVGQS FNWRNGSGEE QQRGKEDEKN SSDFSFQTQI  120
QSSSNMFQVE PLKKQDMWKF NEPTKQTDFS PERTATKSEF PSIQSFSSEM AEGKPEIQSS  180
SVPGSGYFDY TSASQSVREQ KRTEDGFNWR KYGQKQVKGS ENPRSYYKCT HPNCSVKKKV  240
EKSLDGHITE IVYKGQHSHP KPQSTRRTNS QSIHQPSSSC TNSGITDHSV VTLGNPQMDH  300
FSIQEDSSAS VGEEEFEQTP QTSYSGGDGD NLGPDAKRWK GDNENDGYSV SASRSVREPR  360
VVVETTSEID ILDDGFRWRK YGQKVVKGNP NARSYYKCTA PGCSVRKHVE RAAHDIKAVI  420
TTYEGKHNHD VPAARGSGKY NPNRNSQNSN ISAPIRPSAV NCYSNSSSFT NSLYNNTRLP  480
ATGNQESFSL DKFKNPGSFG YSDLNRPMGS HTNHAQYTDA ANSRAKDGRK DDSFLQSFLS  540
KDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37191433578Probable WRKY transcription factor 4
2lex_A2e-37191433578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29552.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248047.10.0probable WRKY transcription factor 33
SwissprotQ6IEQ71e-111WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A445J7A10.0A0A445J7A1_GLYSO; WRKY transcription factor WRKY24 isoform A
STRINGGLYMA09G41670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-95WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]