PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29220.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 452aa    MW: 50902.1 Da    PI: 5.4484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29220.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07624625
                -SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                C+f+ar G C  Gd+C FaH
  KHN29220.1  6 CKFYAR-GACLKGDQCDFAH 24
                ******.************* PP
2zf-CCCH27.26.7e-092750226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k  +C+++++ G+C yG+rC++ H+
  KHN29220.1 27 KDDICSYYQK-GFCAYGSRCRYKHV 50
                6679******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.197124IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-52449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2342552IPR000571Zinc finger, CCCH-type
SMARTSM003560.00192751IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-62750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-52849IPR000571Zinc finger, CCCH-type
SMARTSM0035664121145IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.39125146IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.25E-9180258No hitNo description
Gene3DG3DSA:3.30.40.101.8E-10181253IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00163187253No hitNo description
PfamPF000971.0E-7188251IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.84188252IPR001841Zinc finger, RING-type
SMARTSM001841.1E-5188251IPR001841Zinc finger, RING-type
PROSITE patternPS005180212221IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.619281310IPR000571Zinc finger, CCCH-type
SMARTSM003560.34281309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSNRFCKFYA RGACLKGDQC DFAHEKKDDI CSYYQKGFCA YGSRCRYKHV KASQPSSSAN  60
GRHSPVLDPV VNHITKGTSS WVLKAVKSSS SDKRARSSQK KNPASLGNDV GQSSTSSAIP  120
SEHLFCAFAA ANCPLEDKCS RIHGNQCLYC RKFCLHPSDW KEKENHLRTC EKKGKYLKAL  180
EDSQEVECNV CLERVLSKPK PADCKFGLLP ECDHAFCLSC IRNWRNSAAP TSGMDIGNAG  240
TANTVRTCPV CRKLSYFVIP SGIWYSTKEE KQEIINNYKA NCKLIDCKHF NFGNGNCPFG  300
ASCFYKHTVK PGSYTWIHHR PPPQCRQNHF DMYDMDMLQD VDLTSAEYFS IMRGSDFFDD  360
MDPFEMMDIS HRLAGDSGPC LGLFDSDEED LDIFQMAALS EALASGVDDF GPEDIGNEDF  420
NPMEAALLPM MMHCNMEDED DDEEEEYSDE DY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243963.10.0E3 ubiquitin-protein ligase makorin-like
RefseqXP_028243964.10.0E3 ubiquitin-protein ligase makorin-like
RefseqXP_028243966.10.0E3 ubiquitin-protein ligase makorin-like
SwissprotE0X9N41e-101C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A445JF280.0A0A445JF28_GLYSO; Putative RING-type E3 ubiquitin transferase C3H69 isoform A
STRINGGLYMA08G16360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.26e-97C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]