PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29035.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 312aa    MW: 35461 Da    PI: 4.715
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29035.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.7e-1957110356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ +q+++Le+ Fe ++++  +++ +LA++lgL+ rqV vWFqNrRa++k
  KHN29035.1  57 KKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWK 110
                 566899***********************************************9 PP
2HD-ZIP_I/II127.36.8e-4156148193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe e+kLep+rK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++++e+L +e+ke
   KHN29035.1  56 EKKRRLSVDQVKALEKNFEVENKLEPDRKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYESLKLNYDTLQQDHEALLKEIKE 148
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1940114IPR009057Homeodomain-like
PROSITE profilePS5007117.42752112IPR001356Homeobox domain
SMARTSM003899.2E-1855116IPR001356Homeobox domain
PfamPF000466.1E-1657110IPR001356Homeobox domain
CDDcd000861.33E-1657113No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2059119IPR009057Homeodomain-like
PRINTSPR000311.2E-58392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000311.2E-592108IPR000047Helix-turn-helix motif
PfamPF021836.1E-16112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKRLGSSDSL GAHMTICPPT DEHSPRNNHA YGREFQSMLE GLDEEGCVEE PGHHSEKKRR  60
LSVDQVKALE KNFEVENKLE PDRKLKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDYGV  120
LKANYESLKL NYDTLQQDHE ALLKEIKELK SRLVQEENNN NTESDVSVKE EMLTTTLCET  180
AIPGSDTKEL SYECFNKSDE VGGGSSVFHV DFKDGSSDSD SSAILNEENN NHSPNNNAAI  240
SSCGVLQSHG LLLSPSSSSM NNCFQFQKQY QTTTTQYVKM EEHNFLSADE ACNFFSDEQA  300
PTLQWYCSEE WS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311650.0KT031165.1 Glycine max clone HN_CCL_178 homeodomain/HOMEOBOX transcription factor (Glyma08g14130.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243735.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J17e-82ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A445JE640.0A0A445JE64_GLYSO; Homeobox-leucine zipper protein ATHB-16
STRINGGLYMA08G14130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-74homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]