PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28036.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 345aa    MW: 38999.8 Da    PI: 8.1915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28036.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51141391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF Ptdeel+v+yL++kv+g++++l  +i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++
  KHN28036.1  14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRK 110
                 79**************************99.88***************7777799***********************************9999.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfy g+apkg+kt+W+mheyrl
  KHN28036.1 111 VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-6610162IPR003441NAC domain
PROSITE profilePS5100560.17914162IPR003441NAC domain
PfamPF023653.1E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGVPEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLL DSSRKNTGTK LDDWVLCRIY KKNSSAQKAV QNGVVPSNEH  180
TQYSNGSSSS SSSQLDDVLE SLPAIDERCF PMPRVNTLQQ QQHEEKINVQ NLGEGGLMDW  240
TNPSVLNSVV DFVSGNNNHN QVVQDQTQGM VNYNACNDLY VPTLCHVGTS VPQKMEEEVQ  300
SGVRNQRVQN NSWFLQNDFT QGFQNSVDTS GFKYPVQPVG FGFRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10911684171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10911684171NO APICAL MERISTEM PROTEIN
3swm_A1e-10911687174NAC domain-containing protein 19
3swm_B1e-10911687174NAC domain-containing protein 19
3swm_C1e-10911687174NAC domain-containing protein 19
3swm_D1e-10911687174NAC domain-containing protein 19
3swp_A1e-10911687174NAC domain-containing protein 19
3swp_B1e-10911687174NAC domain-containing protein 19
3swp_C1e-10911687174NAC domain-containing protein 19
3swp_D1e-10911687174NAC domain-containing protein 19
4dul_A1e-10911684171NAC domain-containing protein 19
4dul_B1e-10911684171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28036.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312170.0KT031217.1 Glycine max clone HN_CCL_1 NAC transcription factor (Glyma12g35000.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195457.10.0NAC domain-containing protein 72-like
SwissprotQ9SQL01e-137JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A445HTR70.0A0A445HTR7_GLYSO; NAC domain-containing protein 55
STRINGGLYMA12G35000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-120NAC domain containing protein 3
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]