PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27898.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 222aa    MW: 25203.7 Da    PI: 5.0369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27898.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-111665455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                  +++E++RR+++++ ++eL +llP+ +   p++ +s  +   +A++YIksL+
  KHN27898.1 16 ERKIVEKNRRSQMKNLYSELNSLLPTrN---PKEAMSLPDQIDEAINYIKSLE 65
                5689**********************55...9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-121283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.151264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-101483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.20E-61469No hitNo description
PfamPF000107.9E-81665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGQQQQGSQP SPTKVERKIV EKNRRSQMKN LYSELNSLLP TRNPKEAMSL PDQIDEAINY  60
IKSLETKVKL EQEKKERLKE RKRTRGGCSS SSEAQGSLKS PNIQIHETGN LLEVILTCGV  120
DSQFMFCEII RILHEENVEV INANSSMVGD LVIHVVHGEV EPSIYQFGAT KVSEKLKWFM  180
NGSFSDVEME PELMWNFKID ATEPWGLLDD LTLDNVLPPN TL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540366.11e-164transcription factor bHLH162
RefseqXP_028192548.11e-164transcription factor bHLH162-like
TrEMBLA0A445HT631e-163A0A445HT63_GLYSO; Transcription factor bHLH162
TrEMBLI1LUH41e-163I1LUH4_SOYBN; Uncharacterized protein
STRINGGLYMA12G33260.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-33bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]