PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27877.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 427aa    MW: 48369.9 Da    PI: 6.1295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27877.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.3e-19228278256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  KHN27877.1 228 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 278
                 59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.54E-34227287No hitNo description
SMARTSM003801.5E-40228291IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23228286IPR016177DNA-binding domain
PROSITE profilePS5103222.998228285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32228286IPR001471AP2/ERF domain
PfamPF008472.5E-12229278IPR001471AP2/ERF domain
PRINTSPR003677.3E-11229240IPR001471AP2/ERF domain
PRINTSPR003677.3E-11251267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAANSGKFD VGDETHKNSR KGSESQDWEI EKGKCVDCSS SQRRQWKPVF DDVSISYNRP  60
FKKIRSPDRQ NTNQSSSSSS SSSSSSSSFS SSIPFQPSPL SNPPSRIVFP FAFDGSQQHP  120
MQFPHQFGTT NPPFPHPSLQ NQQHQMISFG SSQQHNNLAY PPIIASDSSS LLHQHHHHQQ  180
QHQQHQQQLL QYWSDALNLS PRGMLTRLGP DGRPLFRLPT QPINTTKLYR GVRQRHWGKW  240
VAEIRLPRNR TRLWLGTFDT AEDAAMAYDR EAFKLRGENA RLNFPELFLN KDKKEEEQQQ  300
EQEASSPVLS AIAKQHEPSS EHRDVPIEES NENDSGDATV SDDQVHATTE SSEGVSQEMV  360
WGEMSAWFNA IPAAWGPGSP MWDDLDATNN LLCQSHIPFS NPNQQELNDA ERQEQNTGPG  420
YLWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21227285160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6485670.0HE648567.1 Glycine max dreb5 gene for drought responsive element binding protein 5, cultivar XanhBaBe.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192931.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A445HSZ50.0A0A445HSZ5_GLYSO; Ethylene-responsive transcription factor ERF053
STRINGGLYMA12G33020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-58ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]