PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40517.6 Da PI: 6.7138 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.1 | 2.8e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l d++ ++G gtW+t +++ g++R++k+c++rw +yl KHN27247.1 14 KGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++l+++++ G++ W++Ia +++ gRt++++k++w++ KHN27247.1 67 RGKFTEEEEQLIINLHSVIGNK-WAKIATHLP-GRTDNEIKNYWNTN 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.436 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.038 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRPPCCNES GVKKGPWTPE EDEKLMDYIS KHGRGTWRTL PKHAGLNRCG KSCRLRWENY 60 LRPDIKRGKF TEEEEQLIIN LHSVIGNKWA KIATHLPGRT DNEIKNYWNT NLRKKLLQMG 120 IDPETHKPRT DFNHLLNLSQ LLGLSNLGTS TSPWTNPLGL QADVTQIAKL QLLQNMLQLF 180 NGTSLVNIGN PYLLGNQILN PLDTFLNGTN ILPDKDSILR GLEYANPVGN NSGLFLSQTY 240 SDSSVFKSRT EKENETNQEF LGYNQSISTF PENQAENLLP ALVASGPRSS TFNQMDFNYN 300 AARMSTQSPS TTFEAWEKFL IDDDESSGSY WKEILEYVLF STDLPCSYCY VHMHASR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-33 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27247.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235268 | 0.0 | AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548667.2 | 0.0 | transcription factor MYB53 | ||||
Swissprot | Q9S9Z2 | 1e-81 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0B2R633 | 0.0 | A0A0B2R633_GLYSO; Transcription factor MYB39 | ||||
STRING | GLYMA16G13440.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 1e-83 | myb domain protein 107 |
Publications ? help Back to Top | |||
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