PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 251aa MW: 28593.2 Da PI: 8.2903 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 115 | 141 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y +C+++ +tG C y d+CkF+H++ KHN26882.1 115 YQPDICKDYKETGCCGYHDSCKFMHDQ 141 67789********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.34E-8 | 113 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.474 | 114 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-4 | 114 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-9 | 115 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 9.5E-11 | 177 | 233 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 4.89E-10 | 190 | 233 | No hit | No description |
Pfam | PF13920 | 1.4E-6 | 191 | 233 | No hit | No description |
CDD | cd00162 | 1.91E-4 | 192 | 233 | No hit | No description |
PROSITE profile | PS50089 | 9.096 | 192 | 230 | IPR001841 | Zinc finger, RING-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGDSDQLSKS AKNQKTEQVF SFFRKPVNKK NIRKQTEFSK DARAIRERAL KQAAGSLKGK 60 SASSEDEKLY KGINNYKDYK AGFRREQAIA SEKAGGSHGP LWASAHIRVS ARFDYQPDIC 120 KDYKETGCCG YHDSCKFMHD QGDYKSGWQM EKEWEEVEKA RKMKLAAGED ADEEEGANLT 180 DEDEDGSLPF ACFICRNPFV DPVVTKCKCY FCEHCALKHH AKNKKCFVCN QPTLGIFNVA 240 HEIRRKMAED K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 2e-57 | 36 | 247 | 124 | 317 | RING finger protein 113A |
5z58_M | 2e-57 | 36 | 247 | 124 | 317 | RING finger protein 113A |
6ff4_t | 2e-57 | 36 | 247 | 124 | 317 | RING finger protein 113A |
6ff7_t | 2e-57 | 36 | 247 | 124 | 317 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26882.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM587703 | 0.0 | KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304643.1 | 1e-146 | zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_003521790.1 | 1e-146 | zinc finger CCCH domain-containing protein 1 isoform X1 | ||||
Refseq | XP_028224191.1 | 1e-146 | zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-113 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0B2R4V7 | 0.0 | A0A0B2R4V7_GLYSO; Zinc finger CCCH domain-containing protein 1 | ||||
STRING | GLYMA08G39400.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7082 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-109 | C3H family protein |
Publications ? help Back to Top | |||
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