PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN26659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 34689.1 Da PI: 7.5752 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ lvd+++++G g+W++ +++ g+ R++k+c++rw +yl KHN26659.1 14 RGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+ +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l KHN26659.1 67 RGPFTSEEESTIVQLHGMLGNR-WASIASQLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.295 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.30E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.218 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MGKAPCCEKH GVRRGAWTPE EDQALVDYIQ KHGHGSWRSL PKHAGLLRCG KSCRLRWINY 60 LRPGIKRGPF TSEEESTIVQ LHGMLGNRWA SIASQLPGRT DNEIKNFWNT HLKKRLLRSC 120 HSQIAKQLCV IPDQSIVKSE SPSTRHMVQW ESVRVETEAR LSLESTMLNS WPTSKTCPDH 180 FLQLWHSEVG KSFRMIKGKE EGVVSQSLIS QPSSSSKLES CSDVSLQVKT NTGTSSCIPK 240 LEDVSMVHEQ TSSYKPKLDD DTAGSDSGNY EFLDTSDSAL KHLLHMPDSD MGFLGHNDHF 300 QNLLDGTCD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN26659.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235230 | 0.0 | AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028222738.1 | 0.0 | transcription factor MYB41-like | ||||
Refseq | XP_028222739.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 5e-91 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A0B2R349 | 0.0 | A0A0B2R349_GLYSO; Myb-related protein Myb4 | ||||
STRING | GLYMA20G29730.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 8e-89 | myb domain protein 17 |
Publications ? help Back to Top | |||
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