PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25875.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 358aa MW: 39485.2 Da PI: 6.8747

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25875.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.6e-33	186	243	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ KHN25875.1 186 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHP 243 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-35	170	245	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	32.983	180	245	IPR003657	WRKY domain
SMART	SM00774	7.5E-39	185	244	IPR003657	WRKY domain
Pfam	PF03106	7.5E-26	186	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MSVEPKELYY QDLVLDPNIN NQHQGTEAGS NNTMYEKHFS STIIPSDSTA YDSSQAFDPS 60 YMSLTECLQG GMDYNSLATS FGLSPSSSEV FSSVDGNQKP AVEGGDGGGG GGGSETLATL 120 NSSVSSSSSE AGAEEDSGKS KKERQVKTEE GEENSKKGNK EKKKGEKKQK EPRFAFMTKS 180 EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCTVKK RVERSFQDPT TVITTYEGQH 240 NHPVPTSLRG NAAAGMFTPS SLLATPTPLA AGSNFPQDLF LHMHHPHHQY HIHNNLFTTQ 300 STTNTTTATT TTPSSFYSSY NNINNSLLHN QFLPPEYGLL QDIVPSMFHN KTGHHHQN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MSVEPKELYY QDLVLDPNIN NQHQGTEAGS NNTMYEKHFS STIIPSDSTA YDSSQAFDPS  60
YMSLTECLQG GMDYNSLATS FGLSPSSSEV FSSVDGNQKP AVEGGDGGGG GGGSETLATL  120
NSSVSSSSSE AGAEEDSGKS KKERQVKTEE GEENSKKGNK EKKKGEKKQK EPRFAFMTKS  180
EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCTVKK RVERSFQDPT TVITTYEGQH  240
NHPVPTSLRG NAAAGMFTPS SLLATPTPLA AGSNFPQDLF LHMHHPHHQY HIHNNLFTTQ  300
STTNTTTATT TTPSSFYSSY NNINNSLLHN QFLPPEYGLL QDIVPSMFHN KTGHHHQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-29	175	245	7	77	Probable WRKY transcription factor 4
2lex_A	8e-29	175	245	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25875.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-103	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003524110.1	0.0	WRKY transcription factor 28
Refseq	XP_028232422.1	0.0	WRKY transcription factor 28-like isoform X1
Swissprot	Q8VWJ2	6e-73	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A445KN54	0.0	A0A445KN54_GLYSO; WRKY transcription factor 28
TrEMBL	I1K304	0.0	I1K304_SOYBN; Uncharacterized protein
STRING	GLYMA05G25770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	3e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]