PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25815.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 267aa    MW: 29940.8 Da    PI: 9.1139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25815.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-12109151143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      + +WT  E+el++ +  ++G+g+W++Iar++ +++t+ q++s+
       KHN25815.1 109 KEPWTHREHELFLMGLIKYGKGHWSKIARHFLLNKTPQQVQSY 151
                      679*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.833107160IPR017884SANT domain
SMARTSM007179.6E-9108158IPR001005SANT/Myb domain
PfamPF002493.2E-9109151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10109150IPR009057Homeodomain-like
CDDcd001671.39E-9111151No hitNo description
SuperFamilySSF466891.58E-10111159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVAEIIDLSD SPPSSPWSSH NDAARILNFD SVSNEKNQFE KVIPISLMAC TNPNQPQTSL  60
WRAASRHTNE HSQIATTFQP SMQLQRVATV LEPVPESITC MFPHGARLKE PWTHREHELF  120
LMGLIKYGKG HWSKIARHFL LNKTPQQVQS YGASFFRNLP STHLHGFRRR KPSYSTSSLM  180
SKNNNLMAAS ASTTSYFMPM IVNEPQQTHM FFPENAPLNF LLAPSHGEAS SSNNNTTMYG  240
FQMQTSGART SMNASANGEV DLELRLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581720.10.0transcription factor MYB1R1
RefseqXP_028234254.10.0transcription factor MYB1R1-like
TrEMBLA0A0B2QW660.0A0A0B2QW66_GLYSO; Transcription factor MYB1R1
TrEMBLA0A445K9L40.0A0A445K9L4_GLYSO; Transcription factor MYBS1
STRINGGLYMA06G14875.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14942612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-14MYB family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]