PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25762.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 238aa    MW: 26975.8 Da    PI: 9.1532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25762.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-081051451055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+++ ++   L++l+P++     kK++ a+ Le+A +Y+k Lq
  KHN25762.1 105 RQRRQKLSEKTRYLQKLMPWD-----KKMDQATLLEEAYKYVKFLQ 145
                 9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.45595144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-6101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-6101147No hitNo description
Gene3DG3DSA:4.10.280.101.5E-9103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-5105145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-10105162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFSGDGSSMD PMFSGMSLQS LLSMNPSLFE DGFPTLSSLT DDVPTLIIPQ STELNHTNAN  60
TKLPIPKTEP LNFFPQYQLP PLCSPEPKRQ RLESPPVIPQ SSLARQRRQK LSEKTRYLQK  120
LMPWDKKMDQ ATLLEEAYKY VKFLQAQSRV LHSMPSHSHS HSQFCQNGAA FGDLEKLNRS  180
QALQVLVNSP VAQTMLYSQG FCVFSLEQLS LLRKLSQTRQ QQQHMPPDPA SSSRTFFN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593282.11e-174transcription factor bHLH117
RefseqXP_028193387.11e-174transcription factor bHLH117
TrEMBLA0A0B2R1J61e-173A0A0B2R1J6_GLYSO; Transcription factor bHLH117
TrEMBLK7LVY81e-173K7LVY8_SOYBN; Uncharacterized protein
STRINGGLYMA12G32305.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-22bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]