PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN24857.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 314aa MW: 34608.3 Da PI: 6.4234

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN24857.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.6e-31	166	223	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tY g +h KHN24857.1 166 LDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSMVVTTYLGFVTH 223 59**************************************************997766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.3E-32	151	223	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-27	158	223	IPR003657	WRKY domain
PROSITE profile	PS50811	29.103	161	226	IPR003657	WRKY domain
SMART	SM00774	3.5E-37	166	225	IPR003657	WRKY domain
Pfam	PF03106	5.3E-24	167	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MPFSDEIPNN NNLMMTFPFQ VPPTIFDVMM MPSSSSSFID LLGVQDYNAP LFDCLPGGGY 60 RPAPSPASSN VPDSSEVLNT PAASPNLSSI SSSSNEATVN NNAEQSLKPG NDQEEAEAEE 120 EGGNGGRGDD QDQDKTKKQL KPKKKNQKKQ REPRFAFMTK SEVDHLDDGY KWRKYGQKAV 180 KNSPYPRSYY RCTSAGCGVK KRVERSSEDP SMVVTTYLGF VTHAGSFGPS HFMLPHQHHQ 240 QAQSSALMYN NSTTPPLNVV SSSSTSNYMN TTSFGGFVQD HANRHGFGHE ALLRDNGLLQ 300 DIIVPTQVRK EEKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	156	223	7	74	Probable WRKY transcription factor 4
2lex_A	3e-26	156	223	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN24857.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019568	1e-121	EU019568.1 Glycine max WRKY26 (WRKY26) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981424.1	0.0	probable WRKY transcription factor 48 isoform X2
Swissprot	O22900	1e-46	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A0B2QYY5	0.0	A0A0B2QYY5_GLYSO; Putative WRKY transcription factor 23
STRING	GLYMA15G14860.2	1e-175	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-38	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]