PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN24612.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 315aa    MW: 35380.8 Da    PI: 9.587
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN24612.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19176209134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  KHN24612.1 176 CSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVR 209
                 *******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-18170222IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-13171212No hitNo description
Gene3DG3DSA:3.30.50.106.7E-16174208IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.585174206IPR000679Zinc finger, GATA-type
CDDcd002028.39E-15175215No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003204.0E-17176209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIPTYRYSVS SPMPIDLNED HTHHLFSTNH QASCSSSSLS YSILFNPDQD QGGSCSDWKS  60
KHLQSDEEAQ KIVPSSGLSE KDENKSDLKL RVWKKEDKCE NFQGEDNSTK WMPLKMRMMR  120
RLMVSDQTGS DDTEGMISNS QKIKYEEKNS PLSPLGTDDS NYNSSSNHSN ITVRVCSDCH  180
TTKTPLWRSG PKGPKSLCNA CGIRQRKVRR AIAAAATSNG TNPVEAEKSQ VKKGNTLHSK  240
GMKSKTEGAQ QMKKNRKLGA RYRKRFGAFE DLTVRLSKNF ALQQVFPQDE KEAAILLMAL  300
SYGLLHGFPT DRYIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN24612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546455.10.0putative GATA transcription factor 22
TrEMBLA0A0B2QY830.0A0A0B2QY83_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MH700.0I1MH70_SOYBN; Uncharacterized protein
STRINGGLYMA15G18380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-31cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]