PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 27786.8 Da PI: 6.034 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.8 | 2.1e-23 | 82 | 141 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqKe+ +++++r+YYrCt++ +C++ k+v+r +edp + ++tY g+H+++ KHN24556.1 82 DGHQWRKYGQKEILNAKYSRNYYRCTHKydqNCQAIKQVQRIQEDPPLYKTTYLGHHTCN 141 9**************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-24 | 65 | 141 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-23 | 78 | 141 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-33 | 80 | 142 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.89 | 82 | 138 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-23 | 82 | 140 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MINGKDNDSP FVRSLAKNVL RSFTNTLFLL DKYPSYEVSP STKSEDSQES CKSFNSKNKR 60 GCYKRKRNTQ EREEVSQTPK LDGHQWRKYG QKEILNAKYS RNYYRCTHKY DQNCQAIKQV 120 QRIQEDPPLY KTTYLGHHTC NDFLNSAIIL DSNNDPSDTS ILLSFNNTFP TPTKQECPFL 180 SSFPSPSSGK KEEVIPSSSP PETSLDDSSR HNNVTLPPPD FWDVMFDSVD LDDVNLLLDC 240 DD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-21 | 82 | 140 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095645 | 0.0 | BT095645.1 Soybean clone JCVI-FLGm-15G11 unknown mRNA. | |||
GenBank | KT031229 | 0.0 | KT031229.1 Glycine max clone HN_CCL_115 WRKY transcription factor (Glyma03g00460.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006599732.1 | 1e-180 | probable WRKY transcription factor 70 | ||||
Refseq | XP_028207084.1 | 1e-180 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A445GLR4 | 1e-178 | A0A445GLR4_GLYSO; Putative WRKY transcription factor 70 | ||||
TrEMBL | K7MJ24 | 1e-178 | K7MJ24_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G34590.2 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-33 | WRKY DNA-binding protein 70 |