PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN24211.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 462aa MW: 51491 Da PI: 7.2819

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN24211.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	178	215	5	42
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k rr+++NReAAr+sR+RKka++++Le +L + KHN24211.1 178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLVQLE 215 788*************************8655555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	167	220	No hit	No description
SMART	SM00338	2.2E-8	174	243	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	176	220	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-7	178	221	No hit	No description
CDD	cd14708	1.89E-23	178	230	No hit	No description
Pfam	PF00170	3.5E-7	178	216	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.5E-29	261	335	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MKNMQGFKTA QPSSQQLYCH SSFLLRGNDP NQNPARFSDL GEHHHFSAVF HQEDAADLSS 60 SSMFSVKSSN VVGGSNMQYG TLNTNVGHAE IGSSGGGCMD TRQQLMYHKG VTMAALPLGN 120 GQVENWADSG KADNSQQTDD TSTDIDTDDI IPCNRVKNGT RMVVHSKDET KVKPGDQKTL 180 RRLAQNREAA RKSRLRKKAY VQQLESSRVK LVQLEQELQR ARQQGIFIAT PGDQGHLAVG 240 NGALAFDIDY AHWVDEHQRL LNDLRTAVNS QMSDSDLHIL VDSVMAHYNE LFRLKSLGTK 300 ADVLHIHNGM WKTPVERCFM WLGGFRSSEL LKIIKNHLEP LTDQQLMGIY NLQQSSQQAE 360 DALSQGLEAL QQSLVETLSS ISLGPTDSGN VVDYMGQMAL AMGKLADLES FVRQADLLKQ 420 QTLQQLQRIL TTRQTARALL VQTDYISRLR ALSSLWLARP RE

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MKNMQGFKTA QPSSQQLYCH SSFLLRGNDP NQNPARFSDL GEHHHFSAVF HQEDAADLSS  60
SSMFSVKSSN VVGGSNMQYG TLNTNVGHAE IGSSGGGCMD TRQQLMYHKG VTMAALPLGN  120
GQVENWADSG KADNSQQTDD TSTDIDTDDI IPCNRVKNGT RMVVHSKDET KVKPGDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRVK LVQLEQELQR ARQQGIFIAT PGDQGHLAVG  240
NGALAFDIDY AHWVDEHQRL LNDLRTAVNS QMSDSDLHIL VDSVMAHYNE LFRLKSLGTK  300
ADVLHIHNGM WKTPVERCFM WLGGFRSSEL LKIIKNHLEP LTDQQLMGIY NLQQSSQQAE  360
DALSQGLEAL QQSLVETLSS ISLGPTDSGN VVDYMGQMAL AMGKLADLES FVRQADLLKQ  420
QTLQQLQRIL TTRQTARALL VQTDYISRLR ALSSLWLARP RE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN24211.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629584.1	0.0	transcription factor TGA2.2 isoform X1
Refseq	XP_028233780.1	0.0	transcription factor TGA2.2-like isoform X1
Swissprot	Q6IVC2	1e-163	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0B2QRG4	0.0	A0A0B2QRG4_GLYSO; Transcription factor HBP-1b(C1)
TrEMBL	A0A0R0LE00	0.0	A0A0R0LE00_SOYBN; Uncharacterized protein
TrEMBL	K7K2N9	0.0	K7K2N9_SOYBN; Uncharacterized protein
STRING	GLYMA01G21120.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6022	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-123	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]