PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN24070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 166aa MW: 18741.2 Da PI: 5.8811 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 51.2 | 2.8e-16 | 12 | 92 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P r+kki+ d+dvk++s+ea l+s++ elf+ l+ +s a e+kr+t++ i +av+r + + dfl+d+ p KHN24070.1 12 QLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQpTRDFLLDELP 92 7799***************************************************************976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-21 | 11 | 78 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-19 | 13 | 80 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-19 | 14 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAEEEESGVS IQLEFPKGRV KKIMALDKDV KRVSSEALFL VSRSTELFLQ FLAEKSAQVA 60 IEKKRKTVNL EHIREAVKRH QPTRDFLLDE LPPPSQPTKP DRPTQPAGRP KLDPPPRGTR 120 RIDLFFRKPE LDDPAQAQPP ENPAQAQPPE NPDQDQAQSP VPVDES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN24070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001350907.1 | 1e-114 | dr1-associated corepressor-like | ||||
Refseq | XP_028212206.1 | 1e-114 | dr1-associated corepressor-like | ||||
TrEMBL | A0A445FMA3 | 1e-112 | A0A445FMA3_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1MYF9 | 1e-112 | I1MYF9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G01040.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-48 | nuclear factor Y, subunit C13 |