PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN23868.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 551aa    MW: 59825.6 Da    PI: 8.2245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN23868.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32195252260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  KHN23868.1 195 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 252
                 8****************************************.***************85 PP
2WRKY106.31.6e-33370428159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  KHN23868.1 370 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 428
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-27189253IPR003657WRKY domain
PROSITE profilePS5081123.996189253IPR003657WRKY domain
SuperFamilySSF1182902.75E-25191253IPR003657WRKY domain
SMARTSM007742.3E-34194252IPR003657WRKY domain
PfamPF031067.2E-25195251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37355430IPR003657WRKY domain
SuperFamilySSF1182901.96E-29362430IPR003657WRKY domain
PROSITE profilePS5081138.825365430IPR003657WRKY domain
SMARTSM007743.1E-39370429IPR003657WRKY domain
PfamPF031063.3E-26371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MARYKLMSPA KLPISRSPCI TIPPGLSPTS FLESPVLLSN MKVEASPTTG SLRKLQQTMH  60
GSMASAAFPV TTACFDTNTV DDRKSSFFEF KPLSRSNMVP ADFNNHVSKQ STQVEGPGKT  120
QSFASSPLVE SEIAVPSNEL SLSSPVQKVS SSASAPVDVD LDDINHKGNT ATGLQASHVE  180
VRGSGLSVAA EKTSDDGYNW RKYGQKLVKG SEFPRSYYKC THPNCEVKKL FERSHDGQIT  240
EIVYKGTHDH PKPQPSCRYS TGTVLSIQGE RSDKASMAGR DDKATAMYGQ VSHAAEPNST  300
PESSPVATND DGLEGVAGFV SNRTNEEVDN DDPFSKRRKM ELGNVDITPV VKPIREPRVV  360
VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT  420
YEGKHNHDVP AARNSSHDMA VPAAAAGGQT RTKLEESDTI SLDLGMGISS AAEHRSNGQG  480
KMLHSEFGDT QTHTSSSNFK FVHTTSAPVY FGVLHNSSNP FGSRDNRSDG PSLNRSSYPC  540
PQSMGRILMG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37195431878Probable WRKY transcription factor 4
2lex_A1e-37195431878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN23868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3231280.0AY323128.1 Glycine max putative WRKY-type DNA binding protein (WRKY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200588.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A445H0770.0A0A445H077_GLYSO; Putative WRKY transcription factor 20 isoform A
STRINGGLYMA14G01980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein